Factsheet for VIT_10s0116g01920.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042503	Potato	plastid	73.87	68.86
Solyc02g080440.2.1	Tomato	plastid	73.87	68.86
Solyc03g031700.2.1	Tomato	plastid	73.67	68.43
KRH20223	Soybean	plastid	72.5	67.83
PGSC0003DMT400013035	Potato	plastid	72.89	67.7
KRH03586	Soybean	plastid	70.33	67.55
Bra029516.1-P	Field mustard	plastid	72.1	66.49
AT4G04770.1	Thale cress	plastid	71.51	65.35
GSMUA_Achr1P17690_001	Banana	mitochondrion	40.86	62.09
TraesCS3D01G343800.1	Wheat	plastid	62.28	61.79
GSMUA_Achr3P14230_001	Banana	cytosol	30.26	60.39
EES03828	Sorghum	plastid	64.24	60.33
Os01t0830000-01	Rice	plasma membrane, plastid	64.44	60.29
TraesCS3A01G349800.1	Wheat	plastid	63.26	59.19
TraesCS3B01G382400.1	Wheat	plastid	62.67	58.86
AT5G44316.1	Thale cress	plastid	51.67	55.96
HORVU3Hr1G087860.1	Barley	plastid	62.67	48.85
Zm00001d012465_P001	Maize	plastid	28.09	47.51
Zm00001d042998_P001	Maize	plastid	16.9	36.44
VIT_02s0012g01050.t01	Wine grape	plastid	10.41	14.13
VIT_03s0017g01730.t01	Wine grape	mitochondrion	6.88	12.54
VIT_02s0012g01060.t01	Wine grape	cytosol	2.55	10.16
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	0.98	5.81

Protein Annotations

EntrezGene:100266599	wikigene:100266599	MapMan:7.11.1.1.1.1	EMBL:AM456745	ProteinID:CAN76788	ProteinID:CAN76788.1
ProteinID:CCB48230	ProteinID:CCB48230.1	UniProt:F6H7N8	EMBL:FN595248	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	EntrezGene:LOC100266599	wikigene:LOC100266599
PFAM:PF01458	PANTHER:PTHR30508	PANTHER:PTHR30508:SF1	SUPFAM:SSF101960	InterPro:SUF_FeS_clus_asmbl_SufB	InterPro:SUF_FeS_clus_asmbl_SufBD
InterPro:SUF_FeS_clus_asmbl_SufBD_sf	TIGR:TC56987	TIGRFAMs:TIGR01980	UniParc:UPI000210901C	ArrayExpress:VIT_10s0116g01920	EnsemblPlantsGene:VIT_10s0116g01920
EnsemblPlants:VIT_10s0116g01920.t01	unigene:Vvi.2240	RefSeq:XP_002272917	RefSeq:XP_002272917.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:1173991..1176511

Molecular Weight (calculated)

57163.3 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.557

Length

509 amino acids

Sequence
(BLAST)

001: MASLLANGLP RFSPSETPKF PKGFCPKLES LKSLNPKTPK NPTSSVFKVR ADVGFESKTI DSDSPTASPG KHATSSTDDK LQKILNRDYK WGWFENIDSD
101: AIPKGLSEKT IRMISERKNE PDWMLEFRLK SYEKFLKMKE PKWSDNRYPP IDFQDMCYYS EPKKKPSLNS LDEADPELLR YFDKLGVPLN EQNRLANVAV
201: DAVLDSVSIA TTHRKTLEKA GVIFCSISEA IREYPDLVRK YLGRVVPSDD NYYAALNSAV FSDGSFCYVP KDTKCPMQIS TYFRINALET GQFERTLIVA
301: DDRSFVEYLE GCTAPSYDRN QLHAAVVELY CAEGAEIKYS TVQNWYAGDE EGRGGIYNFV TKRGLCSGAR SKISWTQVET GSAITWKYPS VVLEGDDTVG
401: EFYSVALTNN YQQADTGTKM IHKGKNTRSR IISKGISAGN SRNCYRGLVQ VQSKAKNARN SSQCDSMLIG DNAAANTYPY IQVQWTFTST KEYLSTTYTL
501: VLSSTKGNK

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.