Factsheet for Bra029516.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009050.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04770.1	Bra009050.1-P	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16648	Canola	plastid	86.23	99.37
CDX94573	Canola	plastid	80.8	93.7
AT4G04770.1	Thale cress	plastid	90.94	90.13
GSMUA_Achr3P14230_001	Banana	cytosol	38.22	82.75
PGSC0003DMT400042503	Potato	plastid	77.54	78.39
AT5G44316.1	Thale cress	plastid	66.49	78.09
Solyc02g080440.2.1	Tomato	plastid	77.17	78.02
KRH20223	Soybean	plastid	76.63	77.76
KRH03586	Soybean	plastid	74.64	77.74
GSMUA_Achr1P17690_001	Banana	mitochondrion	46.92	77.31
Solyc03g031700.2.1	Tomato	plastid	76.63	77.19
PGSC0003DMT400013035	Potato	plastid	76.63	77.19
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	11.78	75.58
KRH13114	Soybean	cytosol, plastid	11.05	72.62
TraesCS3D01G343800.1	Wheat	plastid	67.03	72.12
VIT_10s0116g01920.t01	Wine grape	plastid	66.49	72.1
Os01t0830000-01	Rice	plasma membrane, plastid	69.02	70.04
TraesCS3A01G349800.1	Wheat	plastid	68.12	69.12
TraesCS3B01G382400.1	Wheat	plastid	67.75	69.0
EES03828	Sorghum	plastid	67.21	68.45
Zm00001d012465_P001	Maize	plastid	35.33	64.78
HORVU3Hr1G087860.1	Barley	plastid	67.57	57.12
Zm00001d042998_P001	Maize	plastid	24.28	56.78
Bra010169.1-P	Field mustard	plastid	17.21	19.92

Protein Annotations

MapMan:7.11.1.1.1.1	EnsemblPlantsGene:Bra029516	EnsemblPlants:Bra029516.1	EnsemblPlants:Bra029516.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006879	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	GO:GO:0016787
GO:GO:0019725	GO:GO:0042626	GO:GO:0055085	GO:GO:2000030	UniProt:M4EL49	PFAM:PF01458
PANTHER:PTHR30508	PANTHER:PTHR30508:SF1	SUPFAM:SSF101960	InterPro:SUF_FeS_clus_asmbl_SufB	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf
TIGRFAMs:TIGR01980	UniParc:UPI0002542691	SEG:seg	:	:	:

Description

AT4G04770 (E=1e-277) ATABC1, LAF6, ATNAP1 | ATABC1 (ATP BINDING CASSETTE PROTEIN 1); ATPase, coupled to transmembrane movement of substances / protein binding / transporter

Coordinates

chrA09:+:17420582..17422319

Molecular Weight (calculated)

61276.0 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.439

Length

552 amino acids

Sequence
(BLAST)

001: MASLLANGIS SFSPQPTPDS SKSPKSFHPK PDSFKFPSSS SKTLIPTPRL VKVRADVGTI ESNPAGNSSS SSTDKLQQYF QNLDYDKKYG FVEDIDSFTI
101: PKGLSEETIR SISTLKDEPD WMLDFRFKAY AKFLTLKEPQ WSDNRYPPID FNNMCYYSAP KKKPTLNSLD EADPQLLDYF DKLGVPLTEQ KRLANVAVDA
201: VLDSVSIATT HRKTLEKSGV IFCSISEAIR EYPDLIKKYL GRVVPIDDNY YAALNSAVFS DGSFCYIPKN TRCPMPISTY FRINAMETGQ FERTLIVAEE
301: GSFVEYLEGC TAPSYDTNQL HAAVVELYCG EGAEIKYSTV QNWYAGDEEG KGGIYNFVTK RGLCAGDRSK ISWTQVETGS AITWKYPSVV LEGDDSVGEF
401: YSVALTNNYQ QADTGTKMIH KGKNTKSRII SKGISAGNSR NCYRGLVQVQ SKAENAKNTS VCDSMLIGDK AAANTYPYIQ VKNPSAKVEH EASTSKIGED
501: QLFYFQQRGI DHERALAAMI SGFCRDVFNK LPDEFGAEVN QLMSIKLEGS VG

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.