CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73913
CDY08583
CDY69136

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	CDX73913	AT3G10670.1	15184673
AT1G32500.1	CDY08583	AT3G10670.1	15184673
AT1G32500.1	CDY69136	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010169.1-P	Field mustard	plastid	99.79	98.95
CDY32277	Canola	plastid	97.89	96.46
AT1G32500.1	Thale cress	mitochondrion, plastid	90.06	89.68
KRH28278	Soybean	plastid	56.03	58.11
VIT_03s0017g01730.t01	Wine grape	mitochondrion	33.4	56.63
KRH77216	Soybean	plasma membrane	35.1	55.33
Solyc08g007010.2.1	Tomato	plastid	56.66	55.26
PGSC0003DMT400052824	Potato	plastid	56.87	55.12
VIT_02s0012g01050.t01	Wine grape	plastid	43.34	54.67
GSMUA_Achr10P...	Banana	plastid	55.6	53.67
TraesCS3D01G032700.1	Wheat	plastid	45.24	45.15
TraesCS3A01G047200.1	Wheat	plastid	45.03	44.94
TraesCS3B01G035600.1	Wheat	plastid	45.03	44.75
EES02550	Sorghum	plastid	44.82	44.26
Zm00001d008549_P002	Maize	plastid	44.4	43.66
KRH63379	Soybean	cytosol	19.24	43.33
Os01t0127300-01	Rice	plasma membrane	42.71	41.91
HORVU3Hr1G004330.1	Barley	plastid	44.19	41.22
CDX91226	Canola	cytosol	11.21	22.94
CDX97313	Canola	vacuole	5.29	22.32
CDX94573	Canola	plastid	17.34	17.23
CDY16648	Canola	plastid	17.34	17.12

Protein Annotations

EnsemblPlants:CDY26899	EnsemblPlantsGene:GSBRNA2T00036601001	GO:A0A078GNS9	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	InterPro:SUF_FeS_clus_asmbl_SufD
PANTHER:PTHR43575	PANTHER:PTHR43575:SF2	PFAM:PF01458	ProteinID:CDY26899	ProteinID:CDY26899.1	SEG:seg
SUPFAM:SSF101960	TIGRFAMs:TIGR01981	UniParc:UPI0004EF1AA3	UniProt:A0A078GNS9	MapMan:7.11.1.1.1.3	:

Description

BnaA05g18130DBnaA05g18130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNS9]

Coordinates

chrLK032196:-:16939..18884

Molecular Weight (calculated)

52608.9 Da

IEP (calculated)

5.894

GRAVY (calculated)

-0.311

Length

473 amino acids

Sequence
(BLAST)

001: MATATVLSRL SLIPNLSSKP KSFSNKRTTP TAVSVRAQAS FSDPFVLELA ESLEDSLSSS SSLPLQRIRD SSAESLLSTP WPSRRDEPFR FTDTSFIRYS
101: QIEPVSTQQR NSEILDNLTE THFPNAVIID GFVSNLTIGP SDLPDGVYFG SFSGLPDDLT NRVSEFIGDF DSGDLFWSIN GMGAPDLTVI YVPAGCKVEN
201: SIHLRYFSGQ TGDRESKRLP VSNPRVFVLV EEGGEVGIVE EFVGRDEHGF YWTNPVLEVV VLKNAKVKHS YLQKESTAAA HIKWTFVRQE AESEYELVEV
301: STGGRLGRHN VHVQQLGPDT LTELTTFHMC VNEQTLDLHS RIVLDHPRGS SRQLHKCIVA HSSGQAVFDG NVRVNKYAQQ TDAGQLTRSL LLKPRATVNI
401: KPNLQIIADD VKCSHGAAIS DLEEDQLFYF QARGIDLETA RRALISSFGS EVIEKFPNRE IRDQARNHVK SLL

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.