CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

cytosol 1
plastid 2
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY26899
CDY32277

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	CDY26899	AT1G32500.1	15184673
AT3G10670.1	CDY32277	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73913	Canola	plastid	92.13	59.23
AT3G10670.1	Thale cress	plastid	92.59	59.17
Solyc06g048540.2.1	Tomato	plastid	78.7	54.49
PGSC0003DMT400070962	Potato	plastid	78.24	54.17
VIT_13s0084g00110.t01	Wine grape	plastid	76.39	51.4
KRH60123	Soybean	plastid	67.59	50.52
KRH41407	Soybean	plastid	67.13	50.17
HORVU4Hr1G050780.1	Barley	plastid	68.52	48.84
KXG39439	Sorghum	plastid	67.59	48.34
TraesCS4B01G171400.1	Wheat	plastid	68.52	48.21
TraesCS4A01G133200.1	Wheat	plastid	68.52	47.9
Zm00001d029039_P001	Maize	plastid	67.13	47.85
TraesCS4D01G173500.1	Wheat	plastid	68.52	46.98
Os03t0332700-01	Rice	plastid	65.74	45.66
CDY69136	Canola	plastid	58.33	44.37
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	34.26	36.27
GSMUA_Achr9P00290_001	Banana	plastid	37.96	32.41

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	GO:A0A078F9W6	UniProt:A0A078F9W6	InterPro:ABC_transporter-like	EnsemblPlants:CDY08583
ProteinID:CDY08583	ProteinID:CDY08583.1	InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0016887
EnsemblPlantsGene:GSBRNA2T00000373001	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1
SUPFAM:SSF52540	SignalP:SignalP-noTM	TIGRFAMs:TIGR01978	UniParc:UPI0004EDE64F	:	:

Description

BnaA05g28190DBnaA05g28190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9W6]

Coordinates

chrLK031986:+:801459..809484

Molecular Weight (calculated)

24185.5 Da

IEP (calculated)

5.706

GRAVY (calculated)

-0.040

Length

216 amino acids

Sequence
(BLAST)

001: MWGIWIRTVI SQIWIVLVGH PDYEVTGGSI VFKGQNLLDM EPEERSLAGL FMSFQSPVEI PGVSNMDFLN MAFNARKRKL GQPELDPIQF YSHLVSKLEV
101: VNMKTDFLNR NVNEGFSGGE RKRNEILQLA VLGAELAILD EIDSGLDVDA LQDVAKAVNG LLTPKNSVLM ITHYQRLLDY IKPTLIHIME NGRIIKTGDK
201: SLAKLLEKEG YKAISG

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.