CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02550

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	EES02550	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029039_P001	Maize	plastid	95.7	95.38
HORVU4Hr1G050780.1	Barley	plastid	82.78	82.51
TraesCS4A01G133200.1	Wheat	plastid	83.77	81.88
TraesCS4B01G171400.1	Wheat	plastid	82.45	81.11
TraesCS4D01G173500.1	Wheat	plastid	82.45	79.05
Os03t0332700-01	Rice	plastid	75.5	73.31
CDY08583	Canola	extracellular, vacuole	48.34	67.59
Solyc06g048540.2.1	Tomato	plastid	60.26	58.33
PGSC0003DMT400070962	Potato	plastid	60.26	58.33
KRH60123	Soybean	plastid	53.64	56.06
KRH41407	Soybean	plastid	53.64	56.06
AT3G10670.1	Thale cress	plastid	62.25	55.62
VIT_13s0084g00110.t01	Wine grape	plastid	58.94	55.45
CDX73913	Canola	plastid	61.59	55.36
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	37.09	54.9
GSMUA_Achr9P00290_001	Banana	plastid	42.38	50.59
CDY69136	Canola	plastid	43.05	45.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	UniProt:A0A1B6QNE0	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	ProteinID:KXG39438.1
EnsemblPlants:KXG39439	ProteinID:KXG39439	ProteinID:KXG39439.1	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SMART:SM00382	EnsemblPlantsGene:SORBI_3001G382800	SUPFAM:SSF52540
TIGRFAMs:TIGR01978	UniParc:UPI0002207046	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:67052337..67056820

Molecular Weight (calculated)

32310.0 Da

IEP (calculated)

5.973

GRAVY (calculated)

-0.049

Length

302 amino acids

Sequence
(BLAST)

001: MAPPLAAVSL TSPLFSPSSS RPLRRRHAPP PSVSFQTRGR SPAAAPAESS GSPLLEVRGL TASVKETGQQ ILAGVDLTIR EGEIHAIMGK NGSGKSTLTK
101: VLVGHPHYEV TGGTILFKGQ DLVDMEPEDR SLAGLFMSFQ APIEIPGVSN FDFLLMAVNA RREKSGLPAL GPLEFYSVVS PKVDALKMDP KFLDRNVNEG
201: FSGGERKRNE ILQLSVIGAD LALLDEIDSG LDVDALEDVA NAVNGLLTPQ NSVMMITHYQ RLLDLIKPSY VHIMENGKII KTGDSSIATQ INEGGFKSIA
301: LV

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.