Factsheet for HORVU4Hr1G050780.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G004330.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	HORVU3Hr1G004330.1	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G133200.1	Wheat	plastid	97.69	95.79
TraesCS4B01G171400.1	Wheat	plastid	96.04	94.79
TraesCS4D01G173500.1	Wheat	plastid	96.04	92.38
Zm00001d029039_P001	Maize	plastid	83.83	83.83
KXG39439	Sorghum	plastid	82.51	82.78
Os03t0332700-01	Rice	plastid	76.57	74.6
CDY08583	Canola	extracellular, vacuole	48.84	68.52
PGSC0003DMT400070962	Potato	plastid	63.04	61.22
Solyc06g048540.2.1	Tomato	plastid	62.71	60.9
KRH41407	Soybean	plastid	56.11	58.82
VIT_13s0084g00110.t01	Wine grape	plastid	61.39	57.94
KRH60123	Soybean	plastid	55.12	57.79
AT3G10670.1	Thale cress	plastid	62.38	55.92
CDX73913	Canola	plastid	61.72	55.65
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	36.3	53.92
GSMUA_Achr9P00290_001	Banana	plastid	42.57	50.99
CDY69136	Canola	plastid	42.9	45.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	InterPro:FeS-cluster_ATPase_SufC
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:HORVU4Hr1G050780	EnsemblPlants:HORVU4Hr1G050780.1	InterPro:IPR003439
UniProt:M0XST9	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43204
PANTHER:PTHR43204:SF1	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01978	UniParc:UPI000295129C	SEG:seg

Description

No Description!

Coordinates

chrchr4H:+:414741661..414747359

Molecular Weight (calculated)

32486.1 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.032

Length

303 amino acids

Sequence
(BLAST)

001: MAPPFAVAAV SSSSPLFSSS SHRRHPPLGS ISVRPRHRTA VASAAATESA GKVLLEVHGL TASVKETGQQ ILKGVDLTVR EGEVHAIMGK NGSGKSTLTK
101: VLVGHPHYEV TGGTILFKGE NLIDMEPEER SLAGLFMSFQ APIEIPGVSN YDFLLMAINA RREKDGLPAL GPLEFYSVVS QKVEALKMEP KILDRNVNEG
201: FSGGERKRNE ILQLSVLGAD LALLDEIDSG LDVDALEDVA HAVNGLLTPQ NSVLMITHYQ RLLDLIKPSY VHIMESGKIV KTGDSSLASH INEGGYKSIA
301: SFV

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.