CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY26899
CDY32277

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	CDY26899	AT1G32500.1	15184673
AT3G10670.1	CDY32277	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G10670.1	Thale cress	plastid	77.82	65.38
CDX73913	Canola	plastid	75.7	63.99
CDY08583	Canola	extracellular, vacuole	44.37	58.33
GSMUA_Achr9P00290_001	Banana	plastid	46.48	52.17
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	36.62	50.98
Solyc06g048540.2.1	Tomato	plastid	54.93	50.0
PGSC0003DMT400070962	Potato	plastid	54.58	49.68
VIT_13s0084g00110.t01	Wine grape	plastid	54.93	48.6
KRH41407	Soybean	plastid	49.3	48.44
KRH60123	Soybean	plastid	47.89	47.06
Os03t0332700-01	Rice	plastid	47.89	43.73
KXG39439	Sorghum	plastid	45.77	43.05
TraesCS4B01G171400.1	Wheat	plastid	46.48	43.0
HORVU4Hr1G050780.1	Barley	plastid	45.77	42.9
Zm00001d029039_P001	Maize	plastid	45.77	42.9
TraesCS4A01G133200.1	Wheat	plastid	46.48	42.72
TraesCS4D01G173500.1	Wheat	plastid	46.48	41.9

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	GO:A0A078JU46	UniProt:A0A078JU46	InterPro:ABC_transporter-like	EnsemblPlants:CDY69136
ProteinID:CDY69136	ProteinID:CDY69136.1	InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0016887
EnsemblPlantsGene:GSBRNA2T00083478001	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1
SUPFAM:SSF52540	UniParc:UPI0004EE264A	SEG:seg	:	:	:

Description

BnaAnng29420DBnaAnng29420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JU46]

Coordinates

chrLK038729:-:271..1511

Molecular Weight (calculated)

31279.9 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.160

Length

284 amino acids

Sequence
(BLAST)

001: MAGVNLQLRH SVTQLFPSIS SSPPRPPQRF QLGTSPSRVL FCNLRANSAA APPLRTTRRS DIIAASSVGS PTSSDSVVGD RDELGKIPLL EVKDLRAVIV
101: ESRQEILKGV NLVVYEGEIH AVMGKNGSGK STFSKVLVGH PDYEVTGGSI VFKGQNLLDM EPEERSLAGL FMSFQSPVEI PGVSNMDFLN MAFNARKRKL
201: GQPELDPIQF YSHLVSKLEV VNMKTDFLNR NVNEGFSGGE RKRNEILQLA VLLQPPLFIS FHKHPFMIEK NVVTKGSWNT VLVP

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.