CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28278
KRH63379
KRH77216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	KRH28278	AT1G32500.1	15184673
AT3G10670.1	KRH63379	AT1G32500.1	15184673
AT3G10670.1	KRH77216	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60123	Soybean	plastid	85.81	85.81
CDY08583	Canola	extracellular, vacuole	50.17	67.13
Solyc06g048540.2.1	Tomato	plastid	65.74	60.9
PGSC0003DMT400070962	Potato	plastid	65.4	60.58
HORVU4Hr1G050780.1	Barley	plastid	58.82	56.11
VIT_13s0084g00110.t01	Wine grape	plastid	62.28	56.07
TraesCS4B01G171400.1	Wheat	plastid	58.82	55.37
TraesCS4A01G133200.1	Wheat	plastid	58.13	54.37
Os03t0332700-01	Rice	plastid	58.48	54.34
KXG39439	Sorghum	plastid	56.06	53.64
CDX73913	Canola	plastid	62.28	53.57
AT3G10670.1	Thale cress	plastid	62.63	53.55
TraesCS4D01G173500.1	Wheat	plastid	58.13	53.33
Zm00001d029039_P001	Maize	plastid	55.71	53.14
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	35.64	50.49
CDY69136	Canola	plastid	48.44	49.3
GSMUA_Achr9P00290_001	Banana	plastid	40.48	46.25

Protein Annotations

EntrezGene:100811883	Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
EMBL:ACUP02004764	InterPro:FeS-cluster_ATPase_SufC	EnsemblPlantsGene:GLYMA_08G028100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0016887
UniProt:I1KPR0	InterPro:IPR003439	EnsemblPlants:KRH41407	ProteinID:KRH41407	ProteinID:KRH41407.1	InterPro:P-loop_NTPase
PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SMART:SM00382
SUPFAM:SSF52540	TIGRFAMs:TIGR01978	UniParc:UPI0001D8425F	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:2249428..2251945

Molecular Weight (calculated)

31704.6 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.026

Length

289 amino acids

Sequence
(BLAST)

001: MALSLLIHCS PTVNPLRRSP KPTLRRVNHR VCVASAATPL LQVNDLRAKI VESNVDILHG VNLTVNQGEV HAIMGKNGSG KSTFAKVLVG HPDYEVTGGS
101: VVFKGENLLE MEPEERSLAG LFMSFQSPVE IPGVSNDLFL AMAYNARMKK LGREEVGPIE FLPYLMEKLQ LVNMKADFLN RNVNQGFSGG ERKRNEILQL
201: AVLGADLAIL DEIDSGLDVD ALRDVANAVN RILTPEKSLL MITHYRRILD LLNPTHVHVM DKGKIARSGD ISMVEAIEAD GYETVSALT

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.