CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41407
KRH60123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	KRH41407	AT3G10670.1	15184673
AT1G32500.1	KRH60123	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g01060.t01	Wine grape	cytosol	29.52	48.44
KRH77216	Soybean	plasma membrane	44.76	31.33
KRH28278	Soybean	plastid	65.24	30.04
KRH13114	Soybean	cytosol, plastid	9.05	22.62
Solyc08g007010.2.1	Tomato	plastid	44.76	19.38
AT1G32500.1	Thale cress	mitochondrion, plastid	43.81	19.37
PGSC0003DMT400052824	Potato	plastid	44.76	19.26
CDY26899	Canola	plastid	43.33	19.24
Bra010169.1-P	Field mustard	plastid	43.33	19.08
CDY32277	Canola	plastid	43.33	18.96
GSMUA_Achr10P...	Banana	plastid	40.48	17.35
TraesCS3D01G032700.1	Wheat	plastid	34.76	15.4
TraesCS3A01G047200.1	Wheat	plastid	34.29	15.19
TraesCS3B01G035600.1	Wheat	plastid	34.29	15.13
Zm00001d008549_P002	Maize	plastid	33.81	14.76
EES02550	Sorghum	plastid	33.33	14.61
HORVU3Hr1G004330.1	Barley	plastid	33.33	13.81
Os01t0127300-01	Rice	plasma membrane	31.43	13.69
KRH03586	Soybean	plastid	15.71	6.23
KRH20223	Soybean	plastid	15.71	6.07

Protein Annotations

EMBL:ACUP02002672	EnsemblPlants:KRH63379	EnsemblPlantsGene:GLYMA_04G172400	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	InterPro:SUF_FeS_clus_asmbl_SufD
PANTHER:PTHR43575	PANTHER:PTHR43575:SF2	PFAM:PF01458	ProteinID:KRH63379	ProteinID:KRH63379.1	SUPFAM:SSF101960
UniParc:UPI0006ED831C	UniProt:A0A0R0KGF0	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:43033133..43035449

Molecular Weight (calculated)

23286.6 Da

IEP (calculated)

5.232

GRAVY (calculated)

-0.117

Length

210 amino acids

Sequence
(BLAST)

001: MYHGLKLIKE RGIHDLVQVE SNSALVVQIA NSDCACDHQG ESGIAAPDLT LAYVLEGFHV DILIQLDNMH PPTPTTEGSD AMQLFNPRSF HAAHIKWTSI
101: RQEASSTYEL TKTDAGPLTR NLLLEPRATI NVQSNLHIVV DDVKCSHGAA ISDLEESKLL YFQVCGIDIE TARRVLVFAF GSEVIDKFPY SSIRDRVYSQ
201: IHNLLDPSSN

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.