CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41407
KRH60123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	KRH41407	AT3G10670.1	15184673
AT1G32500.1	KRH60123	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77216	Soybean	plasma membrane	51.97	79.0
KRH63379	Soybean	cytosol	30.04	65.24
VIT_02s0012g01060.t01	Wine grape	cytosol	17.76	63.28
CDY26899	Canola	plastid	58.11	56.03
Bra010169.1-P	Field mustard	plastid	58.33	55.77
CDY32277	Canola	plastid	57.89	55.0
AT1G32500.1	Thale cress	mitochondrion, plastid	56.8	54.53
Solyc08g007010.2.1	Tomato	plastid	57.68	54.23
PGSC0003DMT400052824	Potato	plastid	57.68	53.89
GSMUA_Achr10P...	Banana	plastid	55.7	51.84
EES02550	Sorghum	plastid	47.15	44.89
TraesCS3D01G032700.1	Wheat	plastid	46.27	44.51
TraesCS3A01G047200.1	Wheat	plastid	46.05	44.3
Zm00001d008549_P002	Maize	plastid	46.71	44.28
TraesCS3B01G035600.1	Wheat	plastid	46.05	44.12
Os01t0127300-01	Rice	plasma membrane	44.08	41.7
HORVU3Hr1G004330.1	Barley	plastid	44.96	40.43
KRH13114	Soybean	cytosol, plastid	4.82	26.19
KRH20223	Soybean	plastid	17.98	15.07
KRH03586	Soybean	plastid	17.11	14.72

Protein Annotations

EntrezGene:100791104	MapMan:7.11.1.1.1.3	EMBL:ACUP02006743	EnsemblPlantsGene:GLYMA_11G042400	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	UniProt:I1LH06	EnsemblPlants:KRH28278
ProteinID:KRH28278	ProteinID:KRH28278.1	PFAM:PF01458	PANTHER:PTHR43575	PANTHER:PTHR43575:SF2	SUPFAM:SSF101960
InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	InterPro:SUF_FeS_clus_asmbl_SufD	TIGRFAMs:TIGR01981	UniParc:UPI00023CD1E6	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:3107428..3109228

Molecular Weight (calculated)

50377.6 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.237

Length

456 amino acids

Sequence
(BLAST)

001: MQERMNGIGF SPAGYSPVIP SSSCFPKKLR VQPQRALSSD PYVLELAETL EDSFPSSPST PLPLQNLRLS SSQSLLSTPW PSRRDEPFRF TDLSFIRQSR
101: ILPVSPTISL LTPTSHLPND VYVGSLSSSS PSLLQRVSHF ICPFPIGDLF FSINGIAAPD LTLVYVPEGC HVDIPIHLDY MLPPTPSTDD SDAAMHLSNP
201: RVLVVVEKGA HVNIIEDFPA SPENQNDSYW SNAAFEAVIG QGAKLTHSYI QTQSFRAAHI KWTSIRQEAS STYELTEVST GGKLGRHNLH IQQLGPDTVT
301: ELSTLHLSVA DQTQDLHSTL VLDHPRGYSR QLHKCIVTHS QGQAVFDGNI KVNRYAQQTD AGQLTRTLLL EPRATVNVKP NLQIVADDVK CSHGAAISDL
401: EESQLLYFQA RGIDIETARR VLVFAFGSEV IDKFPYSSIR DRVRSQIKNL LDPSSN

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.