Factsheet for Solyc06g048540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g007010.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	Solyc08g007010.2.1	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070962	Potato	plastid	96.79	96.79
CDY08583	Canola	extracellular, vacuole	54.49	78.7
VIT_13s0084g00110.t01	Wine grape	plastid	73.4	71.34
CDX73913	Canola	plastid	71.47	66.37
KRH60123	Soybean	plastid	60.9	65.74
KRH41407	Soybean	plastid	60.9	65.74
AT3G10670.1	Thale cress	plastid	70.51	65.09
HORVU4Hr1G050780.1	Barley	plastid	60.9	62.71
TraesCS4A01G133200.1	Wheat	plastid	61.54	62.14
TraesCS4B01G171400.1	Wheat	plastid	60.58	61.56
Zm00001d029039_P001	Maize	plastid	58.65	60.4
TraesCS4D01G173500.1	Wheat	plastid	60.9	60.32
KXG39439	Sorghum	plastid	58.33	60.26
Os03t0332700-01	Rice	plastid	58.65	58.84
CDY69136	Canola	plastid	50.0	54.93
GSMUA_Achr9P00290_001	Banana	plastid	43.59	53.75
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	33.97	51.96

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	InterPro:FeS-cluster_ATPase_SufC
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	UniProt:K4C5A1	InterPro:P-loop_NTPase
PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SMART:SM00382
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g048540.2	EnsemblPlants:Solyc06g048540.2.1	TIGRFAMs:TIGR01978	UniParc:UPI0002766550	SEG:seg

Description

ABC transporter I family member 6, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G10670) UniProtKB/Swiss-Prot;Acc:Q9CAF5]

Coordinates

chr6:-:31212405..31216642

Molecular Weight (calculated)

34019.2 Da

IEP (calculated)

7.047

GRAVY (calculated)

-0.031

Length

312 amino acids

Sequence
(BLAST)

001: MAVFSPTCSS TSPLLSFRNN ISFFPSHRPS FPGVRCTLTV KATVSVESPS SSSTDCRDDS PKVLLEVRDL SAVIVESKQQ ILNGVNLTVR QGEVHAVMGK
101: NGSGKSTFAK VLVGHPDYEI TGGSVSFKGE NLLEMEPEER SLAGLFMSFQ SPVAIPGVSN IDFLNMAYNA QRRKLGLPEL GPIEFYGYIA PKLELVNMKI
201: DFLNRNVNEG FSGGERKRNE ILQLAVLGAD LAILDEIDSG LDVDALRDVA KAVNGLLSPK NSVLMITHYL RLLEFIKPTY IHIMEKGRIV KTGDISIAKV
301: LEKEGYKAIS GP

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.