Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G043100.1 | Wheat | cytosol | 96.28 | 95.81 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 95.95 | 95.65 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 96.28 | 95.51 |
| Os03t0707600-01 | Rice | nucleus | 87.22 | 86.24 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 44.82 | 84.97 |
| Zm00001d033680_P001 | Maize | nucleus | 86.41 | 84.76 |
| EER93592 | Sorghum | cytosol | 85.11 | 83.89 |
| Zm00001d013465_P001 | Maize | cytosol | 84.3 | 83.36 |
| GSMUA_Achr10P... | Banana | cytosol | 55.83 | 72.18 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 53.56 | 69.1 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 52.75 | 63.06 |
| KRH58636 | Soybean | nucleus | 52.91 | 62.52 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 52.1 | 62.4 |
| AT1G14920.1 | Thale cress | nucleus | 51.78 | 60.04 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 52.91 | 58.81 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 54.85 | 57.46 |
| Bra024875.1-P | Field mustard | nucleus | 52.43 | 56.54 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 52.27 | 56.47 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 52.43 | 55.2 |
| CDY04092 | Canola | cytosol | 46.76 | 54.12 |
| CDY64837 | Canola | cytosol | 47.09 | 53.69 |
| Bra017443.1-P | Field mustard | cytosol | 46.93 | 53.02 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 11.16 | 38.55 |
| HORVU3Hr1G058100.1 | Barley | plastid | 34.79 | 38.19 |
| HORVU3Hr1G088820.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 13.43 | 31.92 |
| HORVU1Hr1G090800.1 | Barley | mitochondrion | 27.67 | 31.9 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 15.21 | 29.84 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 15.21 | 29.84 |
| HORVU7Hr1G091000.1 | Barley | cytosol | 20.23 | 29.34 |
| HORVU3Hr1G088780.2 | Barley | cytosol | 24.43 | 28.44 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 21.04 | 28.08 |
| HORVU1Hr1G069140.1 | Barley | cytosol | 20.71 | 27.41 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 25.08 | 26.5 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 18.93 | 26.23 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 14.72 | 25.78 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 22.65 | 25.45 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 18.28 | 25.34 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 19.09 | 24.63 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 18.77 | 24.42 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 22.17 | 24.33 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 20.87 | 23.33 |
Protein Annotations
| Gene3D:1.10.10.1290 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | EMBL:AK372064 | InterPro:DELLA_N_sf |
| UniProt:F2E7E0 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009740 |
| GO:GO:0009987 | EnsemblPlantsGene:HORVU4Hr1G006930 | EnsemblPlants:HORVU4Hr1G006930.1 | InterPro:IPR005202 | InterPro:IPR038088 | PFAM:PF03514 |
| PFAM:PF12041 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | SMART:SM01129 | InterPro:TF_DELLA |
| InterPro:TF_DELLA_N | InterPro:TF_GRAS | UniParc:UPI00000A4659 | SEG:seg | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E7E0]
Coordinates
chrchr4H:-:16668801..16671743
Molecular Weight (calculated)
65209.8 Da
IEP (calculated)
4.719
GRAVY (calculated)
-0.159
Length
618 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREYQDGGG SGGGGDEMGS SRDKMMVSSS EAGEGEEVDE LLAALGYKVR ASDMADVAQK LEQLEMAMGM GGPAPDDGFA THLATDTVHY NPTDLSSWVE
101: SMLSELNAPP PPLPPAPPQL NASTSSTVTG GGGYFDLPPS VDSSSSTYAL RPIISPPVAP ADLSADSVRD PKRMRTGGSS TSSSSSSSSS LGGGAARSSV
201: VEAAPPVAAA AAAPALPVVV VDTQEAGIRL VHALLACAEA VQQENLSAAE ALVKQIPLLA ASQGGAMRKV AAYFGEALAR RVFRFRPQPD SSLLDAAFAD
301: LLHAHFYESC PYLKFAHFTA NQAILEAFAG CRRVHVVDFG IKQGMQWPAL LQALALRPGG PPSFRLTGVG PPQPDETDAL QQVGWKLAQF AHTIRVDFQY
401: RGLVAATLAD LEPFMLQPEG EEDPNEEPEV IAVNSVFEMH RLLAQPGALE KVLGTVRAVR PRIVTVVEQE ANHNSGSFLD RFTESLHYYS TMFDSLEGGS
501: SGGPSEVSSG GAAPAAAAGT DQVMSEVYLG RQICNVVACE GTERTERHET LGQWRNRLGN AGFETVHLGS NAYKQASTLL ALFAGGDGYK VEEKEGCLTL
601: GWHTRPLIAT SAWRLAAP
101: SMLSELNAPP PPLPPAPPQL NASTSSTVTG GGGYFDLPPS VDSSSSTYAL RPIISPPVAP ADLSADSVRD PKRMRTGGSS TSSSSSSSSS LGGGAARSSV
201: VEAAPPVAAA AAAPALPVVV VDTQEAGIRL VHALLACAEA VQQENLSAAE ALVKQIPLLA ASQGGAMRKV AAYFGEALAR RVFRFRPQPD SSLLDAAFAD
301: LLHAHFYESC PYLKFAHFTA NQAILEAFAG CRRVHVVDFG IKQGMQWPAL LQALALRPGG PPSFRLTGVG PPQPDETDAL QQVGWKLAQF AHTIRVDFQY
401: RGLVAATLAD LEPFMLQPEG EEDPNEEPEV IAVNSVFEMH RLLAQPGALE KVLGTVRAVR PRIVTVVEQE ANHNSGSFLD RFTESLHYYS TMFDSLEGGS
501: SGGPSEVSSG GAAPAAAAGT DQVMSEVYLG RQICNVVACE GTERTERHET LGQWRNRLGN AGFETVHLGS NAYKQASTLL ALFAGGDGYK VEEKEGCLTL
601: GWHTRPLIAT SAWRLAAP
001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
Arabidopsis Description
RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.