Factsheet for HORVU4Hr1G026010.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G089730.1
HORVU3Hr1G059830.7

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	HORVU1Hr1G089730.1	AT4G22220.1	21798944
AT1G50420.1	HORVU3Hr1G059830.7	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G185900.1	Wheat	cytosol	93.05	93.05
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	28.92	88.36
TraesCS4D01G127800.2	Wheat	mitochondrion	88.56	83.16
EES16518	Sorghum	cytosol	60.31	59.78
HORVU3Hr1G106260.1	Barley	cytosol	16.37	40.78
CDY68881	Canola	cytosol	21.08	38.52
CDY45059	Canola	cytosol	26.23	38.49
Zm00001d023247_P001	Maize	plastid	48.21	38.39
GSMUA_Achr8P09690_001	Banana	cytosol	33.18	33.18
HORVU5Hr1G043310.1	Barley	cytosol	39.69	32.18
HORVU2Hr1G113490.1	Barley	cytosol	22.65	32.06
HORVU2Hr1G113480.1	Barley	cytosol	22.65	32.06
KRH29080	Soybean	cytosol	32.51	31.87
KRH24106	Soybean	cytosol, nucleus, peroxisome	32.29	31.65
Bra014251.1-P	Field mustard	cytosol	31.17	31.24
Bra018848.1-P	Field mustard	cytosol	30.72	31.14
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	32.96	31.08
CDY03601	Canola	cytosol	31.17	30.96
KRH29971	Soybean	cytosol	30.49	30.77
CDY22795	Canola	cytosol, plastid	30.49	30.63
VIT_13s0019g01220.t01	Wine grape	cytosol	32.74	30.54
KRH62871	Soybean	cytosol	30.27	30.47
Solyc12g099900.1.1	Tomato	nucleus	31.84	30.34
VIT_06s0009g02390.t01	Wine grape	cytosol	31.84	29.96
PGSC0003DMT400011839	Potato	cytosol	31.39	29.91
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	30.94	29.68
AT1G50420.1	Thale cress	cytosol	32.06	29.67
PGSC0003DMT400058477	Potato	cytosol	30.72	29.03
Solyc01g008910.2.1	Tomato	cytosol	30.94	28.99
HORVU3Hr1G088820.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.59	28.46
KRH27822	Soybean	nucleus, plastid	28.92	27.27
HORVU2Hr1G113360.1	Barley	cytosol	28.7	26.95
HORVU3Hr1G088780.2	Barley	cytosol	25.34	21.28
HORVU7Hr1G091000.1	Barley	cytosol	20.18	21.13
HORVU3Hr1G058100.1	Barley	plastid	26.23	20.78
HORVU0Hr1G003230.2	Barley	mitochondrion	21.52	20.73
HORVU1Hr1G069140.1	Barley	cytosol	21.52	20.56
HORVU6Hr1G033280.1	Barley	cytosol	20.4	20.4
HORVU1Hr1G090800.1	Barley	mitochondrion	23.99	19.96
HORVU5Hr1G045920.2	Barley	cytosol	25.34	19.32
HORVU4Hr1G006930.1	Barley	nucleus	25.34	18.28
HORVU7Hr1G010620.1	Barley	cytosol	21.97	17.41
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	13.68	17.28
HORVU0Hr1G004640.1	Barley	mitochondrion, nucleus, plastid	18.16	16.91
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	19.96	16.09
CDY37137	Canola	plastid	30.94	14.47
GSMUA_Achr11P...	Banana	cytosol	30.27	12.25

Protein Annotations

EnsemblPlants:HORVU4Hr1G026010.3	EnsemblPlantsGene:HORVU4Hr1G026010	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF133	PFAM:PF03514	PFscan:PS50985	UniParc:UPI000294E794	UniProt:M0X5P4	MapMan:15.5.12

Description

No Description!

Coordinates

chrchr4H:-:154386614..154391276

Molecular Weight (calculated)

50312.0 Da

IEP (calculated)

7.547

GRAVY (calculated)

-0.172

Length

446 amino acids

Sequence
(BLAST)

001: MHAPCAHTQG TVDDLAQLGP ALYECMAHVI EGSFDKTDRS LRKIRKLASL VDGPLQRMSM IIADSLARRL LCPIQGFAAA LIDPSRYLEQ SCLRAARENF
101: ASISPYLSTG FVTINRAMLE QVQDQKVVRI VDLSCSTSHP WQWLKILHDF HGRPGGPPEL RLTVVHEDIE FLDNMQALLC KQAANLKLFF HFDKVIGKLE
201: TLDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDSVTRD GIAQLQQMAN MARLKQMACP ARSPASTLNY PQTPSPQRQI PRLLVSFLSA IRALEPKIIV
301: MMEQDADHNT PLFHDRFTET VHYYAALFDS LNAVGAANPQ RARVERVLLG EEIKNILVCE GVQRHERHEK LSQWEMHMQR CQVDHVPLSF EAIREGKERL
401: MSYGLRQCKC DEGNADLLLC WGATRLYSIS AWRPHSQNAA PNNVAG

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.