Factsheet for TraesCS4D01G127800.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G406300.1
TraesCS1B01G436500.1
TraesCS1D01G414700.1
TraesCS3A01G240500.1
TraesCS3B01G268800.1
TraesCS3D01G240900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	TraesCS1A01G406300.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1B01G436500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1D01G414700.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3A01G240500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3B01G268800.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3D01G240900.1	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	29.68	96.58
TraesCS4A01G185900.1	Wheat	cytosol	85.26	90.81
HORVU4Hr1G026010.3	Barley	cytosol	83.16	88.56
EES16518	Sorghum	cytosol	54.74	57.78
CDY45059	Canola	cytosol	24.21	37.83
CDY68881	Canola	cytosol	19.37	37.7
Zm00001d023247_P001	Maize	plastid	43.79	37.14
GSMUA_Achr8P09690_001	Banana	cytosol	31.16	33.18
TraesCS3D01G482600.1	Wheat	cytosol	31.37	32.75
KRH29080	Soybean	cytosol	30.32	31.65
Bra018848.1-P	Field mustard	cytosol	29.26	31.59
KRH24106	Soybean	cytosol, nucleus, peroxisome	30.11	31.43
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	31.16	31.29
Bra014251.1-P	Field mustard	cytosol	29.26	31.24
CDY22795	Canola	cytosol, plastid	29.05	31.08
CDY03601	Canola	cytosol	29.26	30.96
Solyc12g099900.1.1	Tomato	nucleus	30.32	30.77
VIT_13s0019g01220.t01	Wine grape	cytosol	30.95	30.75
TraesCS2D01G534700.1	Wheat	cytosol	20.21	30.57
KRH29971	Soybean	cytosol	28.42	30.54
TraesCS5D01G139500.1	Wheat	mitochondrion	35.79	30.41
PGSC0003DMT400011839	Potato	cytosol	29.68	30.13
TraesCS6D01G055100.1	Wheat	cytosol	19.79	29.94
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	29.26	29.89
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	19.58	29.81
KRH62871	Soybean	cytosol	27.79	29.8
VIT_06s0009g02390.t01	Wine grape	cytosol	29.68	29.75
AT1G50420.1	Thale cress	cytosol	29.89	29.46
Solyc01g008910.2.1	Tomato	cytosol	29.47	29.41
PGSC0003DMT400058477	Potato	cytosol	29.05	29.24
KRH27822	Soybean	nucleus, plastid	27.79	27.91
TraesCS6D01G153000.1	Wheat	cytosol	19.16	23.04
TraesCS3D01G385400.1	Wheat	cytosol	24.42	22.44
TraesCS2D01G208500.1	Wheat	cytosol	21.05	22.27
TraesCS3D01G220100.3	Wheat	cytosol, endoplasmic reticulum, plasma membrane	25.05	22.16
TraesCS3D01G385500.1	Wheat	cytosol	24.21	22.16
TraesCS7D01G379200.1	Wheat	cytosol	18.74	20.94
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	21.47	20.86
TraesCS1D01G421200.1	Wheat	cytosol	21.05	19.68
TraesCS1D01G303500.1	Wheat	peroxisome	20.21	19.67
TraesCS4D01G040400.1	Wheat	cytosol	24.21	18.46
TraesCS2D01G095300.1	Wheat	nucleus	27.37	18.18
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	17.47	17.15
TraesCS4D01G054000.1	Wheat	cytosol	19.79	17.09
TraesCS5D01G148000.1	Wheat	plastid	23.37	17.0
TraesCS4D01G122000.1	Wheat	plastid	23.79	16.64
TraesCS7D01G053600.1	Wheat	plastid	21.47	16.27
CDY37137	Canola	plastid	29.26	14.57
GSMUA_Achr11P...	Banana	cytosol	28.63	12.34

Protein Annotations

EnsemblPlants:TraesCS4D01G127800.2	EnsemblPlantsGene:TraesCS4D01G127800	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF133
PFAM:PF03514	PFscan:PS50985	MapMan:15.5.12	:	:	:

Description

No Description!

Coordinates

chr4D:-:112072893..112075331

Molecular Weight (calculated)

53659.9 Da

IEP (calculated)

7.785

GRAVY (calculated)

-0.194

Length

475 amino acids

Sequence
(BLAST)

001: MPILCLYRGY FQIHSNRHVP TTRGVDPAKT PKPCAHEQVT ADDLTQLGPA LYECMAHVIE GSVEKTDRSF MKISKLASVV DGPLQRMSRI IAHSLARRLI
101: CPVQGFAAAL IDPSHYLEQS CLRAARENFA DISPYLSTGF VTINRAMLEQ VQDQKVVRIV DLSCSTTHQW QWIKILQDFH SRPGGPPELR LTVVHEDSEF
201: LDNMQACLCK QAANLKLCFY FDKVIGKLET LDFSNLREIL KINFGEAVVI SCALQMHRLL AVDDSISRDF TAQLQQMANM ARLKQMACSA CSPASTLNYP
301: QTPSPQRQIP SLLVSFLYAI RALEPKIIVM MEQDADHNAP LFHDRFTKTV DYYAALFDSL NAVDAASPQR ARVERVLLGE EIKNILVCEG VQRHERHERL
401: SQWEMHMQRC EVDHVPLSFE AIREGKERLM SYGLKQCKSK EDKAGLLLCW GATRLYSISA WRPRSSNAAP NNVAG

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.