Factsheet for Bra018848.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013601.1-P
Bra020855.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Bra013601.1-P	AT4G22220.1	21798944
AT1G50420.1	Bra020855.1-P	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22795	Canola	cytosol, plastid	98.41	97.52
Bra014251.1-P	Field mustard	cytosol	91.36	90.34
AT1G50420.1	Thale cress	cytosol	89.09	81.33
PGSC0003DMT400011839	Potato	cytosol	70.23	66.03
Solyc12g099900.1.1	Tomato	nucleus	70.0	65.81
VIT_06s0009g02390.t01	Wine grape	cytosol	70.45	65.4
KRH29080	Soybean	cytosol	65.0	62.86
PGSC0003DMT400058477	Potato	cytosol	67.05	62.5
KRH24106	Soybean	cytosol, nucleus, peroxisome	63.41	61.32
Solyc01g008910.2.1	Tomato	cytosol	65.91	60.92
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	63.18	59.78
HORVU3Hr1G106260.1	Barley	cytosol	23.86	58.66
KRH27822	Soybean	nucleus, plastid	62.5	58.14
GSMUA_Achr8P09690_001	Banana	cytosol	58.86	58.07
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	58.18	54.12
Os01t0948200-00	Rice	cytosol	54.09	53.85
TraesCS3A01G487500.1	Wheat	cytosol, plastid	53.64	52.8
TraesCS3B01G535100.1	Wheat	cytosol	53.86	52.32
Zm00001d042127_P001	Maize	plastid	52.73	51.9
TraesCS3D01G482600.1	Wheat	cytosol	53.64	51.87
Zm00001d011881_P001	Maize	cytosol	51.82	50.78
EES02045	Sorghum	cytosol, plastid	52.73	50.54
Os06t0211500-00	Rice	cytosol	18.64	42.93
Os12t0138100-00	Rice	cytosol	42.27	37.8
HORVU2Hr1G113490.1	Barley	cytosol	27.05	37.78
HORVU2Hr1G113480.1	Barley	cytosol	27.05	37.78
Os11t0141500-00	Rice	cytosol	42.05	37.6
Zm00001d023248_P001	Maize	cytosol	42.73	37.15
TraesCS2D01G534700.1	Wheat	cytosol	25.68	35.99
TraesCS6D01G055100.1	Wheat	cytosol	25.45	35.67
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	11.82	35.62
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	25.0	35.26
HORVU5Hr1G043310.1	Barley	cytosol	43.64	34.91
TraesCS5B01G133800.1	Wheat	mitochondrion	43.41	34.6
TraesCS5A01G135000.1	Wheat	mitochondrion	43.41	34.41
TraesCS5D01G139500.1	Wheat	mitochondrion	43.64	34.35
EES16518	Sorghum	cytosol	35.0	34.22
TraesCS2A01G532900.1	Wheat	cytosol	33.18	33.95
Bra012102.1-P	Field mustard	cytosol	12.95	33.93
KXG22822	Sorghum	mitochondrion	42.27	32.24
Bra007056.1-P	Field mustard	mitochondrion, plastid	22.95	31.96
EES09233	Sorghum	cytosol	34.77	31.42
Os12t0138200-00	Rice	cytosol	35.68	30.78
OQU77884	Sorghum	plasma membrane	31.82	30.77
HORVU4Hr1G026010.3	Barley	cytosol	31.14	30.72
TraesCS4A01G185900.1	Wheat	cytosol	31.14	30.72
Os11t0141700-00	Rice	cytosol	35.0	30.43
HORVU2Hr1G113360.1	Barley	cytosol	32.73	30.32
Zm00001d052463_P001	Maize	cytosol	35.45	29.83
TraesCS2B01G562400.1	Wheat	cytosol	32.05	29.75
Bra039762.1-P	Field mustard	cytosol	32.95	29.71
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	31.14	29.65
TraesCS4D01G127800.2	Wheat	mitochondrion	31.59	29.26
TraesCSU01G014000.1	Wheat	cytosol	19.32	28.91
Bra038002.1-P	Field mustard	nucleus, plastid	28.86	28.67
Bra025456.1-P	Field mustard	mitochondrion	15.91	28.46
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	31.36	28.34
OQU77885	Sorghum	cytosol	30.45	27.8
Zm00001d023247_P001	Maize	plastid	32.95	25.89
Bra013973.1-P	Field mustard	cytosol	30.68	25.71
Bra024875.1-P	Field mustard	nucleus	32.27	24.78
Os05t0378200-00	Rice	cytosol	30.0	23.96
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	27.05	23.56
GSMUA_Achr11P...	Banana	cytosol	58.18	23.23
Bra017443.1-P	Field mustard	cytosol	28.64	23.03
Bra026999.1-P	Field mustard	nucleus, plastid	30.68	22.39
Os05t0378500-00	Rice	plastid	27.73	21.79
Bra027620.1-P	Field mustard	plastid	30.45	21.2
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	2.5	3.12
Os11t0141550-01	Rice	cytosol	0.23	0.78

Protein Annotations

MapMan:15.5.12	EnsemblPlantsGene:Bra018848	EnsemblPlants:Bra018848.1	EnsemblPlants:Bra018848.1-P	GO:GO:0000989	GO:GO:0003674
GO:GO:0003712	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005202	UniProt:M4DQQ5	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13
InterPro:Scarecrow-like_3	InterPro:TF_GRAS	UniParc:UPI000253EAF1	:	:	:

Description

AT1G50420 (E=1e-131) SCL3, SCL-3 | SCL3; transcription factor

Coordinates

chrA06:+:1625008..1626330

Molecular Weight (calculated)

49630.6 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.229

Length

440 amino acids

Sequence
(BLAST)

001: MLQEDNGTSS VASSPLQVFS TMSLTRPALL SSPSSPFKDL KPEERGLYLI HLLLTCANHV ASGSLQNANA ALEQLSLLSS PDGDTMQRVA AYFTEALANR
101: ILKSWPGLYK ALNATQRKTS NVSEEVHVRR LFFDMFPILK VSYLLTNRAI LEAMEGEKMV HVIDLDACEP AQWLALIQDF NSRPEGPPHL RITCVHRHKE
201: VLDQMAHRLT EEAEKLDIPF QFNPVVSSLE SLNVDQLRVK TGEALAVSSV LQLHNFLASD DDILRKNGCS LRGDSASSLP LPSSGRIDRF LNAMWSLSPK
301: IMVVTEQDSD HNGSTLMERL LESLYTYAAL FDCLEAKVPR TWQDRIKVEK MFFGEEIKNI IACEGSERKE RHEKLEKWSQ RIDLAGFGNV PLSYFAMLQA
401: RRLLQGYGFD GYMIKEESGC AVICWQDRPL YSVSAWRCRK

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.