Factsheet for Os01t0948200-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0662600-02
Os05t0568100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Os01t0662600-02	AT4G22220.1	21798944
AT1G50420.1	Os05t0568100-01	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G106260.1	Barley	cytosol	38.91	96.09
TraesCS3A01G487500.1	Wheat	cytosol, plastid	91.63	90.6
TraesCS3D01G482600.1	Wheat	cytosol	92.76	90.11
TraesCS3B01G535100.1	Wheat	cytosol	91.63	89.4
Zm00001d042127_P001	Maize	plastid	88.24	87.25
EES02045	Sorghum	cytosol, plastid	89.37	86.06
Zm00001d011881_P001	Maize	cytosol	86.43	85.08
Os06t0211500-00	Rice	cytosol	30.32	70.16
GSMUA_Achr8P09690_001	Banana	cytosol	66.06	65.47
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	65.38	61.1
CDY68881	Canola	cytosol	32.35	58.61
CDY45059	Canola	cytosol	39.37	57.24
Bra018848.1-P	Field mustard	cytosol	53.85	54.09
Bra014251.1-P	Field mustard	cytosol	54.3	53.93
VIT_13s0019g01220.t01	Wine grape	cytosol	57.47	53.14
CDY22795	Canola	cytosol, plastid	53.17	52.93
PGSC0003DMT400011839	Potato	cytosol	55.88	52.78
Solyc12g099900.1.1	Tomato	nucleus	55.66	52.56
CDY03601	Canola	cytosol	53.39	52.56
VIT_06s0009g02390.t01	Wine grape	cytosol	55.88	52.11
PGSC0003DMT400058477	Potato	cytosol	54.75	51.27
Solyc01g008910.2.1	Tomato	cytosol	55.2	51.26
AT1G50420.1	Thale cress	cytosol	55.88	51.24
KRH29080	Soybean	cytosol	51.81	50.33
KRH24106	Soybean	cytosol, nucleus, peroxisome	51.13	49.67
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	52.04	49.46
KRH27822	Soybean	nucleus, plastid	51.58	48.2
KRH62871	Soybean	cytosol	43.67	43.57
KRH29971	Soybean	cytosol	43.44	43.44
Os11t0141500-00	Rice	cytosol	45.25	40.65
Os12t0138100-00	Rice	cytosol	45.02	40.45
Os12t0138200-00	Rice	cytosol	38.01	32.94
Os11t0141700-00	Rice	cytosol	37.33	32.61
Os05t0378200-00	Rice	cytosol	38.24	30.67
Os07t0567700-02	Rice	cytosol	31.0	29.98
Os01t0646300-01	Rice	cytosol	33.03	29.49
Os06t0610350-01	Rice	cytosol	29.41	29.48
Os05t0378500-00	Rice	plastid	36.43	28.75
Os02t0197300-00	Rice	cytosol	28.51	28.25
Os05t0574900-01	Rice	plasma membrane	31.0	27.4
Os05t0485400-00	Rice	peroxisome	28.28	25.0
CDY37137	Canola	plastid	53.17	24.63
GSMUA_Achr11P...	Banana	cytosol	61.31	24.59
Os03t0707600-01	Rice	nucleus	34.39	24.32
Os03t0723000-01	Rice	nucleus	31.0	23.7
Os11t0124300-01	Rice	nucleus, plastid	34.16	23.2
Os04t0432100-00	Rice	nucleus	26.24	23.02
Os12t0122000-01	Rice	plastid	34.16	22.88
Os06t0127800-01	Rice	plastid	30.09	21.56
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	1.81	2.27
Os11t0141550-01	Rice	cytosol	0.23	0.78

Protein Annotations

MapMan:15.5.12	EntrezGene:4325838	ProteinID:BAC15790.1	ProteinID:BAS76213.1	GO:GO:0000989	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003712	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
EnsemblPlantsGene:Os01g0948200	EnsemblPlants:Os01t0948200-00	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13
UniProt:Q8GT03	InterPro:Scarecrow-like_3	InterPro:TF_GRAS	UniParc:UPI00000AE3D8	RefSeq:XP_015610769.1	SEG:seg

Description

Similar to GRAS family transcription factor containing protein. (Os01t0948200-00)

Coordinates

chr1:+:41712445..41714110

Molecular Weight (calculated)

48026.4 Da

IEP (calculated)

6.572

GRAVY (calculated)

-0.079

Length

442 amino acids

Sequence
(BLAST)

001: MVQDEGSSSS VTSSPLHNFS NMPLHPAAAA SPTPPWMVRE LRSDERGLCL IHLLLNCAAA AAAGRLDAAN AALEHIASLA APDGDAMQRV AAAFAEALAR
101: RALRAWPGLC RALLLPRASP TPAEVAAARR HFLDLCPFLR LAGAAANQSI LEAMESEKIV HVIDLGGADA TQWLELLHLL AARPEGPPHL RLTSVHEHKE
201: LLTQTAMALT KEAERLDVPF QFNPVVSRLD ALDVESLRVK TGEALAICSS LQLHCLLASD DDAAAVAGGD KERRSPESGL SPSTSRADAF LGALWGLSPK
301: VMVVAEQEAS HNAAGLTERF VEALNYYAAL FDCLEVGAAR GSVERARVER WLLGEEIKNI VACDGGERRE RHERLERWAR RLEGAGFGRV PLSYYALLQA
401: RRVAQGLGCD GFKVREEKGN FFLCWQDRAL FSVSAWRGRR FD

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.