Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g112900.2.1 | |
| Solyc07g007450.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | Solyc03g112900.2.1 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | Solyc07g007450.2.1 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058477 | Potato | cytosol | 94.96 | 95.76 |
| Solyc12g099900.1.1 | Tomato | nucleus | 81.09 | 82.48 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 72.69 | 73.0 |
| KRH29080 | Soybean | cytosol | 67.86 | 70.99 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 67.86 | 70.99 |
| CDY68881 | Canola | cytosol | 35.92 | 70.08 |
| CDY45059 | Canola | cytosol | 44.54 | 69.74 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 65.13 | 66.67 |
| Bra014251.1-P | Field mustard | cytosol | 61.97 | 66.29 |
| KRH27822 | Soybean | nucleus, plastid | 65.76 | 66.17 |
| Bra018848.1-P | Field mustard | cytosol | 60.92 | 65.91 |
| CDY03601 | Canola | cytosol | 61.55 | 65.26 |
| AT1G50420.1 | Thale cress | cytosol | 65.97 | 65.15 |
| CDY22795 | Canola | cytosol, plastid | 60.5 | 64.86 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 23.95 | 63.69 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 56.3 | 60.09 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 56.72 | 57.08 |
| Os01t0948200-00 | Rice | cytosol | 51.26 | 55.2 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 51.05 | 54.36 |
| Zm00001d042127_P001 | Maize | plastid | 50.42 | 53.69 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 51.05 | 53.64 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 51.05 | 53.41 |
| Zm00001d011881_P001 | Maize | cytosol | 50.21 | 53.23 |
| EES02045 | Sorghum | cytosol, plastid | 50.84 | 52.72 |
| Os06t0211500-00 | Rice | cytosol | 19.12 | 47.64 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 25.42 | 38.53 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 25.21 | 38.1 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 25.21 | 38.1 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 24.79 | 37.58 |
| Os11t0141500-00 | Rice | cytosol | 38.45 | 37.2 |
| Os12t0138100-00 | Rice | cytosol | 38.45 | 37.2 |
| Zm00001d023248_P001 | Maize | cytosol | 39.08 | 36.76 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 32.14 | 35.58 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 22.9 | 34.94 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 39.92 | 34.42 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 39.71 | 34.36 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 10.5 | 34.25 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 39.71 | 34.05 |
| EES16518 | Sorghum | cytosol | 32.14 | 34.0 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 39.71 | 33.81 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 32.35 | 32.42 |
| KXG22822 | Sorghum | mitochondrion | 39.08 | 32.24 |
| Solyc07g043330.1.1 | Tomato | plastid | 28.99 | 31.94 |
| EES09233 | Sorghum | cytosol | 32.14 | 31.42 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 29.41 | 31.39 |
| Os12t0138200-00 | Rice | cytosol | 33.61 | 31.37 |
| Os11t0141700-00 | Rice | cytosol | 33.19 | 31.23 |
| Zm00001d052463_P001 | Maize | cytosol | 34.24 | 31.17 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 30.88 | 31.01 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 28.99 | 30.94 |
| CDY37137 | Canola | plastid | 60.92 | 30.4 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 30.88 | 30.18 |
| OQU77884 | Sorghum | plasma membrane | 28.57 | 29.89 |
| Solyc07g066250.1.1 | Tomato | nucleus | 26.68 | 29.67 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 28.78 | 29.65 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 29.41 | 29.47 |
| TraesCSU01G014000.1 | Wheat | cytosol | 17.86 | 28.91 |
| OQU77885 | Sorghum | cytosol | 29.2 | 28.84 |
| Solyc03g110950.1.1 | Tomato | cytosol | 29.62 | 26.6 |
| Solyc09g066450.1.1 | Tomato | cytosol | 26.47 | 25.2 |
| Zm00001d023247_P001 | Maize | plastid | 29.62 | 25.18 |
| Solyc10g086380.1.1 | Tomato | nucleus | 27.1 | 25.15 |
| Os05t0378200-00 | Rice | cytosol | 28.57 | 24.68 |
| Solyc11g017100.1.1 | Tomato | cytosol | 24.58 | 24.58 |
| Solyc11g011260.1.1 | Tomato | nucleus | 30.04 | 24.32 |
| GSMUA_Achr11P... | Banana | cytosol | 54.83 | 23.68 |
| Solyc02g094340.1.1 | Tomato | nucleus | 33.4 | 23.38 |
| Solyc10g086370.1.1 | Tomato | nucleus | 24.58 | 22.94 |
| Os05t0378500-00 | Rice | plastid | 26.89 | 22.86 |
| Solyc08g080400.1.1 | Tomato | plastid | 29.62 | 20.77 |
| Solyc02g085340.1.1 | Tomato | cytosol | 26.05 | 20.36 |
| Solyc10g074680.1.1 | Tomato | cytosol | 30.88 | 17.8 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 1.47 | 1.98 |
| Os11t0141550-01 | Rice | cytosol | 0.21 | 0.78 |
Protein Annotations
| MapMan:15.5.12 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | UniProt:K4AT87 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 | InterPro:Scarecrow-like_3 | EnsemblPlantsGene:Solyc01g008910.2 | EnsemblPlants:Solyc01g008910.2.1 | InterPro:TF_GRAS |
| UniParc:UPI0002763325 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:2935721..2937612
Molecular Weight (calculated)
53628.4 Da
IEP (calculated)
6.411
GRAVY (calculated)
-0.241
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQDDGSSSV TSSSPLQNFP MMSISPSFVG GGGSPYQWLK DLKSEDRGLY LIHLLLACAN HVANGNLENA NIALDQISYL ASPNGDTMQR IASYFAESLA
101: DRILRSWNGI YKALNSTKLR VVSEDILVKK MFFEYFPFLK VASVIANQAI IEAMEGEKMV HIVDLNASEP LQWRALLQDL SARPEGPPHL RITGVHQQKQ
201: VLEQIAHVLT EEAEKLDVPF QFHQVVSKLE NLDIEKLRVK TGEALAISSV MQLHTLLAHD DEPQKKSPLG FKHLNGVHLQ RAILNQNTLG DLLENEMMTH
301: SVFSPGNESA SSSPLSSSAS TKMEGFLHAL WGLSPKVMVV TEQDSNHNGT TLMERLSESL YYYAALFDCL EFTLQRTSLE RLKVEKMMFG EEIKNIVACE
401: GGERRERHEK LDKWFQRLDG AGFMNVPLSY YAMLQARRLL QSYSCEGYKI KDENGSVVIC WHDRALFSVS AWRCRR
101: DRILRSWNGI YKALNSTKLR VVSEDILVKK MFFEYFPFLK VASVIANQAI IEAMEGEKMV HIVDLNASEP LQWRALLQDL SARPEGPPHL RITGVHQQKQ
201: VLEQIAHVLT EEAEKLDVPF QFHQVVSKLE NLDIEKLRVK TGEALAISSV MQLHTLLAHD DEPQKKSPLG FKHLNGVHLQ RAILNQNTLG DLLENEMMTH
301: SVFSPGNESA SSSPLSSSAS TKMEGFLHAL WGLSPKVMVV TEQDSNHNGT TLMERLSESL YYYAALFDCL EFTLQRTSLE RLKVEKMMFG EEIKNIVACE
401: GGERRERHEK LDKWFQRLDG AGFMNVPLSY YAMLQARRLL QSYSCEGYKI KDENGSVVIC WHDRALFSVS AWRCRR
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.