Factsheet for Zm00001d052463_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011514_P001
Zm00001d029638_P001
Zm00001d030959_P001
Zm00001d043816_P001
Zm00001d043971_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Zm00001d011514_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d029638_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d030959_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d043816_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d043971_P001	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45059	Canola	cytosol	24.28	41.78
CDY68881	Canola	cytosol	18.55	39.75
Zm00001d011881_P001	Maize	cytosol	32.5	37.86
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	34.8	37.37
Zm00001d042127_P001	Maize	plastid	31.93	37.36
Zm00001d023248_P001	Maize	cytosol	34.99	36.17
GSMUA_Achr8P09690_001	Banana	cytosol	30.78	36.1
Bra018848.1-P	Field mustard	cytosol	29.83	35.45
KRH24106	Soybean	cytosol, nucleus, peroxisome	30.78	35.38
KRH29080	Soybean	cytosol	30.59	35.16
Bra014251.1-P	Field mustard	cytosol	29.64	34.83
CDY03601	Canola	cytosol	29.64	34.52
CDY22795	Canola	cytosol, plastid	29.25	34.46
PGSC0003DMT400058477	Potato	cytosol	30.98	34.32
Solyc01g008910.2.1	Tomato	cytosol	31.17	34.24
Solyc12g099900.1.1	Tomato	nucleus	30.59	34.19
PGSC0003DMT400011839	Potato	cytosol	30.4	33.97
VIT_13s0019g01220.t01	Wine grape	cytosol	30.59	33.47
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	30.21	33.4
AT1G50420.1	Thale cress	cytosol	30.78	33.4
VIT_06s0009g02390.t01	Wine grape	cytosol	29.25	32.28
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	27.72	31.18
KRH27822	Soybean	nucleus, plastid	28.11	31.08
KRH62871	Soybean	cytosol	26.0	30.7
KRH29971	Soybean	cytosol	25.62	30.32
Zm00001d023247_P001	Maize	plastid	32.12	30.0
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	25.43	28.79
Zm00001d044065_P001	Maize	cytosol	26.0	28.63
Zm00001d021826_P001	Maize	cytosol	22.37	25.89
Zm00001d015815_P001	Maize	cytosol	20.27	25.48
Zm00001d046783_P001	Maize	mitochondrion	21.99	25.22
Zm00001d009646_P001	Maize	plastid	20.84	22.95
Zm00001d042472_P001	Maize	cytosol	22.56	21.93
Zm00001d038518_P001	Maize	cytosol	20.65	21.73
Zm00001d033834_P001	Maize	cytosol, plastid	22.18	21.05
Zm00001d013385_P001	Maize	cytosol, plastid	22.75	20.91
Zm00001d033680_P001	Maize	nucleus	24.09	20.0
Zm00001d045507_P001	Maize	plastid	23.33	19.81
Zm00001d025133_P001	Maize	cytosol	18.55	19.64
Zm00001d013465_P001	Maize	cytosol	22.94	19.2
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	17.97	18.88
Zm00001d049249_P001	Maize	plastid	24.86	16.77
Zm00001d052380_P001	Maize	plastid	21.41	16.77
Zm00001d005029_P001	Maize	plastid	21.22	16.37
CDY37137	Canola	plastid	29.83	16.35
GSMUA_Achr11P...	Banana	cytosol	28.68	13.61

Protein Annotations

EnsemblPlants:Zm00001d052463_P001	EnsemblPlants:Zm00001d052463_T001	EnsemblPlantsGene:Zm00001d052463	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF21	PFAM:PF03514	PFscan:PS50985	ProteinID:AQK57289.1	SEG:seg
UniParc:UPI0008438F6E	UniProt:A0A1D6QHE2	MapMan:15.5.12	:	:	:

Description

GRAS-transcription factor 24Scarecrow-like protein 3

Coordinates

chr4:+:190499638..190502261

Molecular Weight (calculated)

55805.5 Da

IEP (calculated)

7.878

GRAVY (calculated)

-0.090

Length

523 amino acids

Sequence
(BLAST)

001: MHAADASQSQ PQSSQSHADA ELAAALRECV AHVAAGRFDG GANRCFARVS ALASLGDGPP QRLARIMADG LVRRLIGSFT GRGISGALID SCGDYFDRQS
101: VRAARCAFFK LLPALRVAFV AINRAILDAM ENEKFVHVID LSGPAAHPWQ WLKLMRAFHG RPGGAPQLRI TMVHDDEAFL AHTAALLRRE AEALDMAFSF
201: HPVLGRLETL DLGDLHHALA MRSGDARAFS CALQMHRLLA VDDTDTQQQL AAAAVGTGPS VGPRAASSCS CYPPGDVACY YCPPETAKTS LPDPSPTTPF
301: AAQASSSSSP HPQWTAVPRP ALLPPLAGFL SAARAASPKV VCVMEQDAGD NVAGGLAARF EEALQHYAAV FEALDDAAGA AGEERAAVER VLLWEEVRDV
401: LARDGPERRE RHERLHQWAA RMAGAGFAGV PLSYVAKMEA DAALRRCGLR GYETRGVGGC LLLCRRGRPL YSVSAWRPWP SRGSASASSS GSGSRSSRLP
501: QLVAAPVQMP WPLLLPPPVY HTH

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.