Factsheet for Zm00001d044065_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87235	Sorghum	extracellular	56.63	91.19
Os01t0646300-01	Rice	cytosol	76.21	73.13
TraesCS3A01G233000.1	Wheat	plasma membrane	74.53	70.66
TraesCS3B01G262400.1	Wheat	mitochondrion, plastid	75.16	67.49
TraesCS3D01G220100.3	Wheat	cytosol, endoplasmic reticulum, plasma membrane	74.11	65.55
HORVU3Hr1G058100.1	Barley	plastid	74.74	63.06
KRG92263	Soybean	cytosol	46.11	54.89
KRH34544	Soybean	cytosol	47.16	45.9
KRH63032	Soybean	cytosol	48.0	45.33
KRH54840	Soybean	cytosol	47.37	44.55
VIT_11s0016g04630.t01	Wine grape	plastid	49.26	43.98
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	53.89	41.9
Zm00001d009646_P001	Maize	plastid	41.89	41.89
Zm00001d013465_P001	Maize	cytosol	43.58	33.12
Zm00001d042127_P001	Maize	plastid	30.95	32.89
Zm00001d033680_P001	Maize	nucleus	43.58	32.86
Zm00001d021826_P001	Maize	cytosol	29.47	30.97
Zm00001d011881_P001	Maize	cytosol	28.84	30.51
Zm00001d015815_P001	Maize	cytosol	24.84	28.37
Zm00001d042472_P001	Maize	cytosol	30.53	26.95
Zm00001d023248_P001	Maize	cytosol	28.63	26.88
Zm00001d038518_P001	Maize	cytosol	27.79	26.56
Zm00001d046783_P001	Maize	mitochondrion	25.05	26.1
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	26.74	26.08
Zm00001d052463_P001	Maize	cytosol	28.63	26.0
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	25.89	24.7
Zm00001d033834_P001	Maize	cytosol, plastid	28.63	24.68
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	23.79	24.46
Zm00001d025133_P001	Maize	cytosol	25.26	24.29
Zm00001d013385_P001	Maize	cytosol, plastid	28.84	24.08
Zm00001d052380_P001	Maize	plastid	32.0	22.75
Zm00001d045507_P001	Maize	plastid	28.84	22.24
Zm00001d005029_P001	Maize	plastid	31.37	21.98
Zm00001d049249_P001	Maize	plastid	34.95	21.42
Zm00001d023247_P001	Maize	plastid	22.53	19.11

Protein Annotations

EntrezGene:103650192	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	UniProt:A0A1D6NHK5	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005202	ProteinID:ONM39862.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF7
InterPro:TF_GRAS	UniParc:UPI0001B36D85	EnsemblPlantsGene:Zm00001d044065	EnsemblPlants:Zm00001d044065_P001	EnsemblPlants:Zm00001d044065_T001	SEG:seg

Description

GRAS-transcription factor 46DELLA protein RGA

Coordinates

chr3:+:218260054..218261481

Molecular Weight (calculated)

50565.7 Da

IEP (calculated)

5.786

GRAVY (calculated)

-0.068

Length

475 amino acids

Sequence
(BLAST)

001: MAMGGAFPFQ WPEGPADPVL DDVTLPPLPT AAPDAGVAAY YADAADVHAM HMALPDFAAA LAAMRREEEE AAGIRLVHLL MSCAGAVEAA DHAGASAHLA
101: DAHAALAAVS PTSGIGRVAV HFTAALSRRL FPPTPSPSPS PPPPAPHAAD ADRAFLYHRF YEAGPYLKFA HFTANQAILE AVQGCKHVHI IDFSIMQGLQ
201: WPALIQALAL RPGGPPSLRL TGIGPPSPPG RDDLRDVGVR LADLARSVRV HFSFRGVAAN RLDEVRPWML QVSQGEAVAV NSVLQLHRLL ADAPSSGDAR
301: APIDAVLECV ASVRPRVFTV VEQEADHNKP GFLDRFTEAL FYYSAVFDSL DAASGGAGDA AAEAYLEREI CDIVCGEGAG RRERHEPLWR WRDRLGRTGL
401: AAVPLGANAL RQARMLVGLF SGEGHCVEEA EGCLTLGWHG RPLFSASAWR AEENNQSDSR SRSSGSEESN ISCSS

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.