Factsheet for TraesCS3D01G220100.3

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G233000.1	Wheat	plasma membrane	88.83	95.21
TraesCS3B01G262400.1	Wheat	mitochondrion, plastid	89.39	90.74
HORVU3Hr1G058100.1	Barley	plastid	87.71	83.66
Os01t0646300-01	Rice	cytosol	75.61	82.02
OQU87235	Sorghum	extracellular	43.76	79.66
Zm00001d044065_P001	Maize	cytosol	65.55	74.11
KRG92263	Soybean	cytosol	43.95	59.15
KRH34544	Soybean	cytosol	44.69	49.18
KRH63032	Soybean	cytosol	45.81	48.91
KRH54840	Soybean	cytosol	45.62	48.51
VIT_11s0016g04630.t01	Wine grape	plastid	46.37	46.8
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	40.78	44.79
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	50.65	44.52
TraesCS1D01G421200.1	Wheat	cytosol	41.9	44.29
TraesCS4D01G040400.1	Wheat	cytosol	40.41	34.83
TraesCS3D01G482600.1	Wheat	cytosol	28.12	33.19
TraesCS2D01G208500.1	Wheat	cytosol	27.0	32.29
TraesCS6D01G055100.1	Wheat	cytosol	18.44	31.53
TraesCS6D01G153000.1	Wheat	cytosol	22.91	31.14
TraesCS2D01G534700.1	Wheat	cytosol	17.88	30.57
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	17.69	30.45
TraesCS7D01G379200.1	Wheat	cytosol	23.65	29.88
TraesCS3D01G385400.1	Wheat	cytosol	28.31	29.4
TraesCS3D01G385500.1	Wheat	cytosol	28.31	29.29
TraesCS1D01G303500.1	Wheat	peroxisome	24.58	27.05
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	23.09	25.62
TraesCS4D01G127800.2	Wheat	mitochondrion	22.16	25.05
TraesCS5D01G139500.1	Wheat	mitochondrion	26.07	25.04
TraesCS4D01G054000.1	Wheat	cytosol	25.33	24.73
TraesCS2D01G095300.1	Wheat	nucleus	31.84	23.92
TraesCS5D01G148000.1	Wheat	plastid	28.68	23.58
TraesCS7D01G053600.1	Wheat	plastid	26.82	22.97
TraesCS4D01G122000.1	Wheat	plastid	28.12	22.24

Protein Annotations

EnsemblPlants:TraesCS3D01G220100.3	EnsemblPlantsGene:TraesCS3D01G220100	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF7
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1

Description

No Description!

Coordinates

chr3D:+:300500400..300503753

Molecular Weight (calculated)

56989.8 Da

IEP (calculated)

5.258

GRAVY (calculated)

0.058

Length

537 amino acids

Sequence
(BLAST)

001: MAMGTFPFQW PMEPPPAPPS GLGGSLLPSL LPPPPAPVPD DGAAYYAAAD MQASSMPELA PPFPSRDAVA AELAMRRAAE EVAGIRLVHL LMSCAGAVEA
101: GDHVLAAAHL ADANASLAAV SIASGIGRVA VHFTDALSRR LFRSPATPPA TDAEHAFLYH HFYEACPYLK FAHFTANQAI LEAFHGCDSV HVIDFSLMQG
201: LQWPALIQAL ALRPGGPPFL RITGIGPPSP PGRDELRDVG LRLADLARSV RVRFSFRGVA ANSLDEVHPW MLQIAPGEAV AVNSVLQLHR LLADSADQAP
301: IDAVLDCVAS LQPKIFTVVE QEADHNKPGF LDRFTEALFY YSAVFDSLDA ASANGTGNAM AEAYLQREIC DIVCNEGTAR MERHEPLSQW RDRLGRAGLS
401: AVPLGASALR QARMLLGLFS GEGHSVEEAE GCLTLGWHGR PLFSASAWRA AAVGCDADGE DNHTSNNSNF SGSSGGGSDS NNSSSSNGLM ALGTTTSQLS
501: TTKVLPGSDE GRAMTVVRIW LASVLLVIVR WTMGIWM

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.