Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G191800.1 | Wheat | cytosol | 97.47 | 97.47 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 95.7 | 96.43 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 94.18 | 83.41 |
| KXG29713 | Sorghum | cytosol | 73.67 | 73.3 |
| Zm00001d015815_P001 | Maize | cytosol | 71.39 | 67.79 |
| Os02t0197300-00 | Rice | cytosol | 76.2 | 67.49 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 64.05 | 59.53 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 47.09 | 48.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.08 | 47.64 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 43.8 | 46.88 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 44.81 | 46.7 |
| VIT_19s0015g01930.t01 | Wine grape | cytosol | 47.34 | 45.28 |
| Solyc07g066250.1.1 | Tomato | nucleus | 44.81 | 41.36 |
| PGSC0003DMT400057265 | Potato | nucleus, plastid | 45.06 | 41.3 |
| CDY50028 | Canola | nucleus, plastid | 40.25 | 38.13 |
| CDY54362 | Canola | plastid | 40.25 | 37.77 |
| Bra038002.1-P | Field mustard | nucleus, plastid | 40.25 | 35.89 |
| AT1G55580.1 | Thale cress | plastid | 39.75 | 35.28 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 32.66 | 28.35 |
| TraesCS2D01G208500.1 | Wheat | cytosol | 31.9 | 28.06 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 21.77 | 27.39 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 21.52 | 27.07 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 20.0 | 25.32 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 30.38 | 24.59 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 29.37 | 23.97 |
| TraesCS3D01G220100.3 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 31.14 | 22.91 |
| TraesCS4D01G338800.1 | Wheat | cytoskeleton, cytosol, peroxisome, plastid | 28.1 | 22.7 |
| TraesCS1D01G421200.1 | Wheat | cytosol | 28.86 | 22.44 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 30.89 | 22.18 |
| TraesCS3D01G385400.1 | Wheat | cytosol | 27.09 | 20.7 |
| TraesCS3D01G385500.1 | Wheat | cytosol | 26.84 | 20.42 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 27.85 | 19.68 |
| TraesCS7D01G053600.1 | Wheat | plastid | 30.89 | 19.46 |
| TraesCS5D01G148000.1 | Wheat | plastid | 32.15 | 19.45 |
| TraesCS4D01G122000.1 | Wheat | plastid | 33.16 | 19.29 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 23.04 | 19.16 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 30.13 | 19.1 |
| TraesCS2D01G095300.1 | Wheat | nucleus | 34.43 | 19.02 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G153000.1 | EnsemblPlantsGene:TraesCS6D01G153000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF49 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr6D:+:127083857..127085044
Molecular Weight (calculated)
41514.2 Da
IEP (calculated)
5.390
GRAVY (calculated)
0.025
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDPPEPDDD AAQPPRAPVA APSPRGLVLA CADLLHRGDL DGARRLAGAV LSGADPRGDA ADRLAHHFAR ALALRADEGR SGVGPPAAVG VGVAPASSAA
101: HLAYNKIAPF LRFAHLTANQ AILEAAAGAR RVHIVDLDAA HGVQWPPLLQ AICDRADAAV GLPEVRITGA GPDLDVLRRT GDRLRAFASS LNLPFRFHPL
201: LLPCTAQLAA DPAACLELHP DETLAVNCVL FLHRLSGDGE LTAFLRWVRS MNPAVVTIAE REGEAGRGED DDDLPRRVAA AMDFYSAVFD ALEATVPPGS
301: AERLAVEQEI LGTEIDAVVA GPGSGGGRPR SFEAWTAAVR ASGLSPWPAS TFAVSQARLL LRLHYPSEGY AAEEAGGACF LGWQTRTLMS VSSWH
101: HLAYNKIAPF LRFAHLTANQ AILEAAAGAR RVHIVDLDAA HGVQWPPLLQ AICDRADAAV GLPEVRITGA GPDLDVLRRT GDRLRAFASS LNLPFRFHPL
201: LLPCTAQLAA DPAACLELHP DETLAVNCVL FLHRLSGDGE LTAFLRWVRS MNPAVVTIAE REGEAGRGED DDDLPRRVAA AMDFYSAVFD ALEATVPPGS
301: AERLAVEQEI LGTEIDAVVA GPGSGGGRPR SFEAWTAAVR ASGLSPWPAS TFAVSQARLL LRLHYPSEGY AAEEAGGACF LGWQTRTLMS VSSWH
001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
Arabidopsis Description
SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.