Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, golgi, plastid, extracellular

Predictor Summary:
  • mitochondrion 3
  • golgi 1
  • plastid 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, mitochondrion, plastid
Any Predictor:extracellular, golgi, mitochondrion, plastid
iPSORT:mitochondrion
MultiLoc:golgi
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G406300.1
TraesCS1B01G436500.1
TraesCS1D01G414700.1
TraesCS3A01G240500.1
TraesCS3B01G268800.1
TraesCS3D01G240900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G50420.1 TraesCS1A01G406300.1 AT4G22220.1 21798944
AT1G50420.1 TraesCS1B01G436500.1 AT4G22220.1 21798944
AT1G50420.1 TraesCS1D01G414700.1 AT4G22220.1 21798944
AT1G50420.1 TraesCS3A01G240500.1 AT4G22220.1 21798944
AT1G50420.1 TraesCS3B01G268800.1 AT4G22220.1 21798944
AT1G50420.1 TraesCS3D01G240900.1 AT4G22220.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G113480.1 Barley cytosol 79.17 78.41
HORVU2Hr1G113490.1 Barley cytosol 79.17 78.41
TraesCS2D01G534700.1 Wheat cytosol 72.76 72.29
TraesCS6D01G055100.1 Wheat cytosol 71.79 71.34
TraesCSU01G014000.1 Wheat cytosol 65.38 69.39
CDY45059 Canola cytosol 36.22 37.17
CDY68881 Canola cytosol 28.21 36.07
OQU77884 Sorghum plasma membrane 44.55 30.55
Zm00001d037901_P001 Maize cytosol, peroxisome, plastid 44.55 30.09
TraesCS3D01G482600.1 Wheat cytosol 43.59 29.89
OQU77885 Sorghum cytosol 42.63 27.59
GSMUA_Achr8P09690_001 Banana cytosol 37.18 26.01
Bra014251.1-P Field mustard cytosol 36.22 25.39
GSMUA_Achr11P... Banana cytosol, nucleus, peroxisome, plastid 38.14 25.16
CDY22795 Canola cytosol, plastid 35.58 25.0
Bra018848.1-P Field mustard cytosol 35.26 25.0
Os05t0378200-00 Rice cytosol 43.91 24.86
CDY03601 Canola cytosol 35.58 24.72
VIT_13s0019g01220.t01 Wine grape cytosol 37.82 24.69
Solyc12g099900.1.1 Tomato nucleus 35.9 23.93
VIT_06s0009g02390.t01 Wine grape cytosol 36.22 23.84
KRH29971 Soybean cytosol 33.65 23.76
PGSC0003DMT400011839 Potato cytosol 35.58 23.72
AT1G50420.1 Thale cress cytosol 36.54 23.65
KRH29080 Soybean cytosol 34.29 23.52
KRH24106 Soybean cytosol, nucleus, peroxisome 34.29 23.52
KRH62871 Soybean cytosol 33.33 23.48
PGSC0003DMT400058477 Potato cytosol 35.26 23.31
Solyc01g008910.2.1 Tomato cytosol 34.94 22.9
KRH77666 Soybean endoplasmic reticulum, nucleus, peroxisome, plastid 32.69 21.94
KRH27822 Soybean nucleus, plastid 32.05 21.14
TraesCS5D01G139500.1 Wheat mitochondrion 37.82 21.11
TraesCS6D01G153000.1 Wheat cytosol 25.32 20.0
TraesCS2D01G208500.1 Wheat cytosol 28.53 19.82
TraesCS4D01G127800.2 Wheat mitochondrion 29.81 19.58
TraesCS7D01G379200.1 Wheat cytosol 25.32 18.59
TraesCS3D01G385500.1 Wheat cytosol 30.77 18.5
TraesCS3D01G385400.1 Wheat cytosol 30.13 18.18
TraesCS4D01G338800.1 Wheat cytoskeleton, cytosol, peroxisome, plastid 28.21 18.0
TraesCS3D01G220100.3 Wheat cytosol, endoplasmic reticulum, plasma membrane 30.45 17.69
TraesCS1D01G421200.1 Wheat cytosol 27.24 16.73
TraesCS1D01G303500.1 Wheat peroxisome 25.32 16.19
TraesCS4D01G040400.1 Wheat cytosol 28.53 14.29
TraesCS4D01G054000.1 Wheat cytosol 24.68 14.0
TraesCS2D01G095300.1 Wheat nucleus 31.73 13.85
TraesCS2D01G302600.1 Wheat cytosol, mitochondrion, nucleus 20.83 13.43
TraesCS7D01G053600.1 Wheat plastid 25.96 12.92
TraesCS5D01G148000.1 Wheat plastid 25.96 12.4
TraesCS4D01G122000.1 Wheat plastid 26.92 12.37
CDY37137 Canola plastid 35.58 11.64
GSMUA_Achr11P... Banana cytosol 37.5 10.62
Protein Annotations
EnsemblPlants:TraesCS2D01G055700.1EnsemblPlantsGene:TraesCS2D01G055700InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636PANTHER:PTHR31636:SF123
PFAM:PF03514PFscan:PS50985SEG:segMapMan:15.5.12::
Description
No Description!
Coordinates
chr2D:-:22246914..22248492
Molecular Weight (calculated)
35090.5 Da
IEP (calculated)
6.186
GRAVY (calculated)
0.027
Length
312 amino acids
Sequence
(BLAST)
001: MCPVLRLSGT TTNYTIINVA RTERNAVLHV VDLGGADAAQ WLLVLLLFAK RLGAGAHNQI LRLTIVNEED EFLSVTRGLL AWEAESLHIG FQFHPVKLHI
101: NQLLSIEPLN FMSDEALVIV STLQLHRLLA DEFVEVAAHP HDRKGKVQAH ATMTRADALL RDLAELSPKL MLVTEQEADH NDEFMGRFDN ALNYYGALFD
201: ALEESIPARG LAIERSDMER CLLLQEIRDI VACDGAQHRE RHERMVKWAE RMKAAGFASA AMSADAVAQT VMLGQMVTGC RREYRVSSKK DLCFFIHWCD
301: IPLFSVSTWR AV
Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.