Factsheet for TraesCSU01G014000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G406300.1
TraesCS1B01G436500.1
TraesCS1D01G414700.1
TraesCS3A01G240500.1
TraesCS3B01G268800.1
TraesCS3D01G240900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	TraesCS1A01G406300.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1B01G436500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1D01G414700.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3A01G240500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3B01G268800.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3D01G240900.1	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	69.39	65.38
HORVU2Hr1G113490.1	Barley	cytosol	65.65	61.27
HORVU2Hr1G113480.1	Barley	cytosol	65.65	61.27
CDY45059	Canola	cytosol	29.25	28.29
CDY68881	Canola	cytosol	23.47	28.28
OQU77884	Sorghum	plasma membrane	36.73	23.74
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	34.69	22.08
OQU77885	Sorghum	cytosol	35.37	21.58
GSMUA_Achr8P09690_001	Banana	cytosol	31.97	21.08
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	32.99	20.51
Bra014251.1-P	Field mustard	cytosol	29.25	19.33
Bra018848.1-P	Field mustard	cytosol	28.91	19.32
CDY22795	Canola	cytosol, plastid	28.57	18.92
KRH24106	Soybean	cytosol, nucleus, peroxisome	29.25	18.9
PGSC0003DMT400011839	Potato	cytosol	29.93	18.8
CDY03601	Canola	cytosol	28.57	18.71
KRH29080	Soybean	cytosol	28.91	18.68
Solyc12g099900.1.1	Tomato	nucleus	29.59	18.59
PGSC0003DMT400058477	Potato	cytosol	29.59	18.43
VIT_13s0019g01220.t01	Wine grape	cytosol	29.93	18.41
Os05t0378200-00	Rice	cytosol	34.35	18.33
VIT_06s0009g02390.t01	Wine grape	cytosol	29.25	18.14
AT1G50420.1	Thale cress	cytosol	29.59	18.05
Solyc01g008910.2.1	Tomato	cytosol	28.91	17.86
KRH62871	Soybean	cytosol	26.53	17.61
KRH29971	Soybean	cytosol	26.19	17.42
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	27.55	17.42
KRH27822	Soybean	nucleus, plastid	27.55	17.12
CDY37137	Canola	plastid	28.57	8.81
GSMUA_Achr11P...	Banana	cytosol	29.93	7.99

Protein Annotations

EnsemblPlants:TraesCSU01G014000.1	EnsemblPlantsGene:TraesCSU01G014000	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF123
PFAM:PF03514	PFscan:PS50985	MapMan:15.5.12	:	:	:

Description

No Description!

Coordinates

chrUn:-:16885057..16885941

Molecular Weight (calculated)

32785.8 Da

IEP (calculated)

7.063

GRAVY (calculated)

0.021

Length

294 amino acids

Sequence
(BLAST)

001: MCPFHSLAGT MTNYAIIDAA RTERNVVLHV VDLGSADATQ WLILLHLFAK HPGAGAHDEI LRLTIVNEED EFLSVTGALL AREAESLHIG FQFHPVKLHI
101: NQLLSVEPLG VRSGEALVIV FTLQLHHLLA DELVVVAARP PDRKGKVRAH ATMTRDDALL RDVAELSPKL MVVNEQEANH NGEFMGWFNN MLNYMGPCLM
201: PWRRAYLHAG RQWSDRMWNG ACSCRRSGIS LPVMACNAHE RMVKWAEQMK AVGLASTTMS ADAVAQTVML GQMVTGCSRA YRVSSEKDVY FYIH

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.