Factsheet for PGSC0003DMT400011839

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035008
PGSC0003DMT400046740
PGSC0003DMT400078947

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	PGSC0003DMT400035008	AT4G22220.1	21798944
AT1G50420.1	PGSC0003DMT400046740	AT4G22220.1	21798944
AT1G50420.1	PGSC0003DMT400078947	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099900.1.1	Tomato	nucleus	97.86	97.86
PGSC0003DMT400058477	Potato	cytosol	84.19	83.47
VIT_06s0009g02390.t01	Wine grape	cytosol	76.71	75.74
CDY45059	Canola	cytosol	48.5	74.67
CDY68881	Canola	cytosol	38.68	74.18
KRH24106	Soybean	cytosol, nucleus, peroxisome	70.94	72.97
KRH29080	Soybean	cytosol	70.94	72.97
Bra018848.1-P	Field mustard	cytosol	66.03	70.23
Bra014251.1-P	Field mustard	cytosol	66.67	70.11
CDY03601	Canola	cytosol	66.03	68.82
CDY22795	Canola	cytosol, plastid	64.96	68.47
AT1G50420.1	Thale cress	cytosol	70.09	68.05
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	67.31	67.74
KRH27822	Soybean	nucleus, plastid	67.95	67.23
GSMUA_Achr8P09690_001	Banana	cytosol	60.26	63.23
HORVU3Hr1G106260.1	Barley	cytosol	23.93	62.57
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	62.18	61.52
Os01t0948200-00	Rice	cytosol	52.78	55.88
TraesCS3A01G487500.1	Wheat	cytosol, plastid	52.99	55.48
Zm00001d042127_P001	Maize	plastid	51.71	54.14
TraesCS3B01G535100.1	Wheat	cytosol	52.35	54.08
TraesCS3D01G482600.1	Wheat	cytosol	52.56	54.07
Zm00001d011881_P001	Maize	cytosol	51.5	53.67
EES02045	Sorghum	cytosol, plastid	51.92	52.94
Os06t0211500-00	Rice	cytosol	18.59	45.55
PGSC0003DMT400052191	Potato	cytosol	32.27	40.27
Os12t0138100-00	Rice	cytosol	40.81	38.82
Os11t0141500-00	Rice	cytosol	40.6	38.62
HORVU2Hr1G113480.1	Barley	cytosol	25.85	38.41
HORVU2Hr1G113490.1	Barley	cytosol	25.85	38.41
Zm00001d023248_P001	Maize	cytosol	41.03	37.94
TraesCS2D01G534700.1	Wheat	cytosol	25.43	37.9
TraesCS6D01G055100.1	Wheat	cytosol	25.21	37.58
TraesCS5B01G133800.1	Wheat	mitochondrion	42.52	36.05
HORVU5Hr1G043310.1	Barley	cytosol	42.31	36.0
TraesCS5A01G135000.1	Wheat	mitochondrion	42.31	35.68
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	23.72	35.58
TraesCS5D01G139500.1	Wheat	mitochondrion	42.31	35.42
TraesCS2A01G532900.1	Wheat	cytosol	32.27	35.12
EES16518	Sorghum	cytosol	33.33	34.67
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	10.68	34.25
KXG22822	Sorghum	mitochondrion	40.6	32.93
HORVU2Hr1G113360.1	Barley	cytosol	32.48	32.0
PGSC0003DMT400030652	Potato	cytosol	27.99	31.87
CDY37137	Canola	plastid	64.96	31.87
EES09233	Sorghum	cytosol	33.12	31.83
TraesCS2B01G562400.1	Wheat	cytosol	32.05	31.65
Os11t0141700-00	Rice	cytosol	34.19	31.62
TraesCS4A01G185900.1	Wheat	cytosol	30.13	31.61
Os12t0138200-00	Rice	cytosol	34.4	31.57
HORVU4Hr1G026010.3	Barley	cytosol	29.91	31.39
OQU77884	Sorghum	plasma membrane	29.7	30.55
Zm00001d052463_P001	Maize	cytosol	33.97	30.4
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	29.91	30.3
TraesCSU01G014000.1	Wheat	cytosol	18.8	29.93
TraesCS4D01G127800.2	Wheat	mitochondrion	30.13	29.68
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	30.77	29.57
PGSC0003DMT400057265	Potato	nucleus, plastid	26.71	29.0
PGSC0003DMT400023877	Potato	cytosol	25.21	28.64
OQU77885	Sorghum	cytosol	29.27	28.42
PGSC0003DMT400039455	Potato	cytosol	30.34	26.64
Zm00001d023247_P001	Maize	plastid	31.41	26.25
PGSC0003DMT400040589	Potato	nucleus	31.62	25.17
PGSC0003DMT400087504	Potato	nucleus	25.85	24.9
GSMUA_Achr11P...	Banana	cytosol	58.55	24.86
Os05t0378200-00	Rice	cytosol	28.63	24.32
PGSC0003DMT400049448	Potato	nucleus	26.28	24.12
Os05t0378500-00	Rice	plastid	27.56	23.04
PGSC0003DMT400007879	Potato	plastid	29.27	20.18
PGSC0003DMT400038574	Potato	cytosol	25.64	19.64
PGSC0003DMT400049445	Potato	cytosol	17.09	19.0
PGSC0003DMT400043358	Potato	cytosol	31.84	18.04
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	1.71	2.27
Os11t0141550-01	Rice	cytosol	0.21	0.78

Protein Annotations

EntrezGene:102594123	MapMan:15.5.12	GO:GO:0000989	GO:GO:0003674	GO:GO:0003712	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	UniProt:M1A099
PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400004649	PGSC:PGSC0003DMG400004649	EnsemblPlants:PGSC0003DMT400011839	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF13	InterPro:Scarecrow-like_3	InterPro:TF_GRAS	UniParc:UPI000296058E	RefSeq:XP_006349782.1	SEG:seg

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400004649]

Coordinates

chr12:+:60447862..60450627

Molecular Weight (calculated)

52559.2 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.206

Length

468 amino acids

Sequence
(BLAST)

001: MLQDDGSSSV TSSSPIQIFP MMSVSPSFGS SNQWLKELKS EERGLYLIHL LLACANHVAA GSLENANIAL DHISQLASPS GDTMQRIASY FTEALADRIL
101: RSWPGLYKAL RSTKLSVVSE EILVRKMFFE IFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAAEPLQWR ALLQDLSARP EGPPHLRITG VHQQKEVLDQ
201: MAHVLTQEAE KLDIPFQFNQ VVSRLENLDV EKLRVKTGEA LAISSVMQLH TLLAHDNEKK SPLPSKHSNG VNLHRALVNQ NTLGEFLEKD MANGCSPSND
301: TASSSPLCST GSTKIDSFLN ALWGLSPKVM VVTEQDSNHN GTTLMERLSE SLHFYAALFD CLESTLPRTS LERLKVEKML LGEEIRNIIA CEGIERKERH
401: EKLEKWFQRF DTSGFGNVPL SYYAMLQARR LLQSYSCEGY KIKEENGCVV ICWQDRALFS VSSWRCRK

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.