Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77885 | Sorghum | cytosol | 74.89 | 71.78 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 32.68 | 48.09 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 32.68 | 47.94 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 32.68 | 47.94 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 32.47 | 47.77 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 30.09 | 44.55 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 38.74 | 41.63 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 41.34 | 40.21 |
| Zm00001d042127_P001 | Maize | plastid | 36.58 | 37.81 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 38.74 | 37.76 |
| Zm00001d011881_P001 | Maize | cytosol | 35.28 | 36.3 |
| CDY68881 | Canola | cytosol | 18.83 | 35.66 |
| CDY45059 | Canola | cytosol | 22.94 | 34.87 |
| TraesCSU01G014000.1 | Wheat | cytosol | 22.08 | 34.69 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 32.47 | 33.63 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 32.25 | 31.5 |
| CDY22795 | Canola | cytosol, plastid | 30.09 | 31.31 |
| Bra018848.1-P | Field mustard | cytosol | 29.65 | 31.14 |
| Bra014251.1-P | Field mustard | cytosol | 29.44 | 30.56 |
| Solyc12g099900.1.1 | Tomato | nucleus | 30.52 | 30.13 |
| CDY03601 | Canola | cytosol | 29.22 | 30.07 |
| PGSC0003DMT400011839 | Potato | cytosol | 30.3 | 29.91 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 30.52 | 29.75 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 29.22 | 29.67 |
| KRH29080 | Soybean | cytosol | 29.0 | 29.45 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 30.3 | 29.29 |
| Solyc01g008910.2.1 | Tomato | cytosol | 29.65 | 28.78 |
| KRH29971 | Soybean | cytosol | 27.49 | 28.73 |
| AT1G50420.1 | Thale cress | cytosol | 29.87 | 28.63 |
| PGSC0003DMT400058477 | Potato | cytosol | 29.22 | 28.6 |
| Os05t0378200-00 | Rice | cytosol | 33.77 | 28.31 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 28.36 | 28.17 |
| Zm00001d023248_P001 | Maize | cytosol | 30.3 | 27.67 |
| KRH62871 | Soybean | cytosol | 26.41 | 27.54 |
| KRH27822 | Soybean | nucleus, plastid | 27.49 | 26.85 |
| Zm00001d052463_P001 | Maize | cytosol | 28.79 | 25.43 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 25.11 | 23.82 |
| Zm00001d044065_P001 | Maize | cytosol | 24.46 | 23.79 |
| Zm00001d021826_P001 | Maize | cytosol | 22.08 | 22.57 |
| Zm00001d038518_P001 | Maize | cytosol | 23.38 | 21.73 |
| Zm00001d015815_P001 | Maize | cytosol | 19.48 | 21.63 |
| Zm00001d042472_P001 | Maize | cytosol | 24.89 | 21.38 |
| Zm00001d023247_P001 | Maize | plastid | 25.32 | 20.89 |
| Zm00001d009646_P001 | Maize | plastid | 21.21 | 20.63 |
| Zm00001d046783_P001 | Maize | mitochondrion | 20.35 | 20.61 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 20.35 | 18.88 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 22.08 | 18.51 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 22.51 | 18.28 |
| Zm00001d025133_P001 | Maize | cytosol | 19.26 | 18.02 |
| Zm00001d033680_P001 | Maize | nucleus | 24.24 | 17.78 |
| Zm00001d013465_P001 | Maize | cytosol | 24.03 | 17.76 |
| Zm00001d045507_P001 | Maize | plastid | 22.29 | 16.72 |
| Zm00001d052380_P001 | Maize | plastid | 22.73 | 15.72 |
| Zm00001d005029_P001 | Maize | plastid | 22.51 | 15.34 |
| Zm00001d049249_P001 | Maize | plastid | 25.11 | 14.97 |
| CDY37137 | Canola | plastid | 29.87 | 14.47 |
| GSMUA_Achr11P... | Banana | cytosol | 32.25 | 13.52 |
Protein Annotations
| EnsemblPlants:Zm00001d037901_P001 | EnsemblPlants:Zm00001d037901_T001 | EnsemblPlantsGene:Zm00001d037901 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF123 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:AQK85151.1 | SEG:seg |
| UniParc:UPI000842B6E6 | UniProt:A0A1D6M1N2 | MapMan:15.5.12 | : | : | : |
Description
GRAS-transcription factor 77Scarecrow-like protein 3
Coordinates
chr6:+:141534061..141535449
Molecular Weight (calculated)
50165.4 Da
IEP (calculated)
7.098
GRAVY (calculated)
-0.024
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVEAVPLMA VGSGEPAVRS SAEAMPAAAT MAAAAAAAVI RPGGSQSQQL DKSLILLVKC VMQHCVRAME AGNTEASNNA LAALSSVSSL DGDPIQRLTS
101: AFTEALARRA LEPLLQGLPW AIKEQLRRPP PPAYADVARQ WFHTLSPLLR AAGLAANHAI VKALEGEQDV HVVDLGGANP RQWVELLRLL AARPGGAPSS
201: SLRLTIVSDH ACFLSCATGL LTAEATRLHV PLALNPVRSH IDNFSAAVIA ALGVQRGQAV VISSTLQLHR LIADTTIVSH RHAGRQHDET MTRADALLHV
301: LRDLSPKLLV LTEQEADHND GEGRGLWDRV DSAFDYYAVL FNDLEVSRVP RESLDRAVVE RLLLREEIVD IIARDGAARR ERHEKLLRWV PRMLAAGFQP
401: ALVGMDGFKE TTRLADRLSD GDGQRPLYRV VKVKEKGCFF VHSCWTPMFS VSLWQPAPGD HE
101: AFTEALARRA LEPLLQGLPW AIKEQLRRPP PPAYADVARQ WFHTLSPLLR AAGLAANHAI VKALEGEQDV HVVDLGGANP RQWVELLRLL AARPGGAPSS
201: SLRLTIVSDH ACFLSCATGL LTAEATRLHV PLALNPVRSH IDNFSAAVIA ALGVQRGQAV VISSTLQLHR LIADTTIVSH RHAGRQHDET MTRADALLHV
301: LRDLSPKLLV LTEQEADHND GEGRGLWDRV DSAFDYYAVL FNDLEVSRVP RESLDRAVVE RLLLREEIVD IIARDGAARR ERHEKLLRWV PRMLAAGFQP
401: ALVGMDGFKE TTRLADRLSD GDGQRPLYRV VKVKEKGCFF VHSCWTPMFS VSLWQPAPGD HE
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.