Factsheet for Zm00001d042472_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01920	Sorghum	cytosol	91.82	91.99
TraesCS3A01G392400.1	Wheat	cytosol	77.7	80.54
TraesCS3D01G385500.1	Wheat	cytosol	77.32	80.15
TraesCS3B01G424600.1	Wheat	cytosol	77.32	80.15
TraesCS3A01G392600.1	Wheat	cytosol	70.82	79.71
TraesCS3D01G385400.1	Wheat	cytosol	76.58	79.69
TraesCS3B01G424500.1	Wheat	cytosol	76.58	79.69
TraesCS3A01G392500.1	Wheat	cytosol	76.39	79.5
HORVU3Hr1G088780.2	Barley	cytosol	76.77	77.78
HORVU3Hr1G088820.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.13	72.69
GSMUA_Achr8P01180_001	Banana	nucleus	44.05	51.86
VIT_17s0000g10300.t01	Wine grape	nucleus	47.03	48.75
PGSC0003DMT400039455	Potato	cytosol	46.84	47.28
Solyc03g110950.1.1	Tomato	cytosol	46.28	46.98
KRH57194	Soybean	cytosol	43.49	45.79
KRH03910	Soybean	cytosol	43.68	45.72
Zm00001d042127_P001	Maize	plastid	27.14	32.66
Zm00001d011881_P001	Maize	cytosol	26.39	31.63
Zm00001d044065_P001	Maize	cytosol	26.95	30.53
Zm00001d021826_P001	Maize	cytosol	25.09	29.87
Zm00001d038518_P001	Maize	cytosol	24.54	26.56
Zm00001d009646_P001	Maize	plastid	22.49	25.47
Zm00001d023248_P001	Maize	cytosol	23.61	25.1
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	21.38	24.89
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	22.49	24.85
Zm00001d049249_P001	Maize	plastid	35.5	24.65
Zm00001d013465_P001	Maize	cytosol	28.07	24.16
Zm00001d033680_P001	Maize	nucleus	28.25	24.13
Zm00001d025133_P001	Maize	cytosol	22.12	24.09
Zm00001d015815_P001	Maize	cytosol	18.4	23.8
Zm00001d045507_P001	Maize	plastid	26.21	22.89
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	21.0	22.69
Zm00001d052463_P001	Maize	cytosol	21.93	22.56
Zm00001d013385_P001	Maize	cytosol, plastid	23.23	21.97
Zm00001d033834_P001	Maize	cytosol, plastid	22.49	21.96
Zm00001d046783_P001	Maize	mitochondrion	18.4	21.71
Zm00001d052380_P001	Maize	plastid	26.58	21.41
Zm00001d023247_P001	Maize	plastid	22.12	21.25
Zm00001d005029_P001	Maize	plastid	26.21	20.8

Protein Annotations

EnsemblPlants:Zm00001d042472_P001	EnsemblPlants:Zm00001d042472_T001	EnsemblPlantsGene:Zm00001d042472	EntrezGene:103652347	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF24	PFAM:PF03514	PFscan:PS50985	ProteinID:ONM35475.1
SEG:seg	UniParc:UPI0002216FD9	UniProt:A0A1D6N495	MapMan:15.5.12	MapMan:26.9.2.3	:

Description

GRAS-transcription factor 7Protein SCARECROW

Coordinates

chr3:-:168768639..168770255

Molecular Weight (calculated)

57768.7 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.090

Length

538 amino acids

Sequence
(BLAST)

001: MGTSEQPCTS TPNSFTTTSS SYVTSQQIHH LPQHDSVVCT EPGLGFPYYY VTDRQQDAAF DGDEVELGFQ ASKATRVDYY SSPYQLSWPL ARAAAAESSR
101: VRKKRFWDVL ESCKQKVEAM EAMESPLVAF QEAEDGGAVV GDGGGGGGGR GSGGGADGMR LVQLLVACAE AVACRDRAQA AALLRELQAG APVHGTAFQR
201: VASCFVQGLA DRLALAHPPA LGPASMAFCI PPSCAGRDGG ARAEALALAY DLCPYLRFAH FVANASILEA FEGETNVHVL DLGMTLGLDR AHQWRALLDG
301: LAARAGAAAR PARVRVTAVG APADAMRAVG RELLAYAEGL GMCLEFRAVD RSLESLHIDD LGIAADEAVA INSVLELHCV VKESRGALNS VLQTIRKLSP
401: KAFVLVEQDA GHNGPFFLGR FMEALHYYAA VFDALDAALP RYDARRARVE QFHFGAEIRN VVGCEGAARV ERHERADQWR RRMSRAGFQS MPIRMAARAR
501: EWLEENAGGG GYTVAEEKGC LVLGWKGKPV IAASCWKC

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.