Factsheet for HORVU3Hr1G088820.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
TargetP:	secretory

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G385500.1	Wheat	cytosol	79.23	39.69
TraesCS3B01G424600.1	Wheat	cytosol	78.85	39.5
TraesCS3A01G392400.1	Wheat	cytosol	78.85	39.5
HORVU3Hr1G088780.2	Barley	cytosol	74.23	36.35
Zm00001d042472_P001	Maize	cytosol	72.69	35.13
EES01920	Sorghum	cytosol	71.54	34.64
GSMUA_Achr8P01180_001	Banana	nucleus	53.08	30.2
VIT_17s0000g10300.t01	Wine grape	nucleus	53.08	26.59
HORVU2Hr1G113490.1	Barley	cytosol	31.15	25.71
HORVU2Hr1G113480.1	Barley	cytosol	31.15	25.71
HORVU3Hr1G106260.1	Barley	cytosol	17.31	25.14
PGSC0003DMT400039455	Potato	cytosol	50.0	24.39
Solyc03g110950.1.1	Tomato	cytosol	49.62	24.34
KRH03910	Soybean	cytosol	47.69	24.12
KRH57194	Soybean	cytosol	46.92	23.87
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	28.08	20.68
HORVU0Hr1G003230.2	Barley	mitochondrion	31.54	17.71
HORVU4Hr1G026010.3	Barley	cytosol	28.46	16.59
HORVU1Hr1G069140.1	Barley	cytosol	29.62	16.49
HORVU7Hr1G091000.1	Barley	cytosol	26.92	16.43
HORVU2Hr1G113360.1	Barley	cytosol	29.62	16.21
HORVU6Hr1G033280.1	Barley	cytosol	26.54	15.47
HORVU3Hr1G058100.1	Barley	plastid	33.46	15.45
HORVU5Hr1G043310.1	Barley	cytosol	32.31	15.27
HORVU7Hr1G010620.1	Barley	cytosol	32.31	14.92
HORVU5Hr1G045920.2	Barley	cytosol	32.31	14.36
HORVU0Hr1G004640.1	Barley	mitochondrion, nucleus, plastid	26.15	14.2
HORVU1Hr1G090800.1	Barley	mitochondrion	28.85	13.99
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	28.85	13.56
HORVU4Hr1G006930.1	Barley	nucleus	31.92	13.43

Protein Annotations

EnsemblPlants:HORVU3Hr1G088820.1	EnsemblPlantsGene:HORVU3Hr1G088820	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	ncoils:Coil
PANTHER:PTHR31636	PANTHER:PTHR31636:SF24	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000B4681D2
UniProt:A0A287M5R0	MapMan:15.5.12	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:625945682..625946867

Molecular Weight (calculated)

25157.4 Da

IEP (calculated)

7.236

GRAVY (calculated)

-0.012

Length

260 amino acids

Sequence
(BLAST)

001: MCPYLRFAHF VANTSILEAF EGETNVHVVD LGMTMGLNRG HQWRALLDGL AKRACGKPAR VRITGVGARV DTMRAVGREL EAYADELGIT LEFMAVDRTL
101: ESLQVDDLGI DADEAVAINS VLELHCVVKE SRGALNSVLQ TIRKLSPKAF VLVEQDAGHN GPFFLGRFME ALHYYAALFD ALDAALPRYD ARRARVEQFH
201: FGAEIRNVVG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXKCLFHT RYISYKRAGN

Best Arabidopsis Sequence Match ( AT1G66350.1 )
(BLAST)

001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E

Arabidopsis Description

RGL1DELLA protein RGL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.