CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042472_P001	Maize	cytosol	91.99	91.82
TraesCS3A01G392600.1	Wheat	cytosol	71.88	80.75
TraesCS3B01G424500.1	Wheat	cytosol	76.91	79.88
TraesCS3A01G392400.1	Wheat	cytosol	77.09	79.77
TraesCS3B01G424600.1	Wheat	cytosol	77.09	79.77
TraesCS3D01G385500.1	Wheat	cytosol	77.09	79.77
TraesCS3A01G392500.1	Wheat	cytosol	76.72	79.69
TraesCS3D01G385400.1	Wheat	cytosol	76.72	79.69
HORVU3Hr1G088780.2	Barley	cytosol	76.54	77.4
HORVU3Hr1G088820.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.64	71.54
GSMUA_Achr8P01180_001	Banana	nucleus	44.32	52.08
VIT_17s0000g10300.t01	Wine grape	nucleus	47.3	48.94
PGSC0003DMT400039455	Potato	cytosol	47.49	47.84
Solyc03g110950.1.1	Tomato	cytosol	46.74	47.36
KRH57194	Soybean	cytosol	43.76	45.99
KRH03910	Soybean	cytosol	43.76	45.72
OQU83473	Sorghum	cytosol	31.47	40.05
EES02045	Sorghum	cytosol, plastid	26.82	31.37
OQU87235	Sorghum	extracellular	17.13	31.19
KXG36498	Sorghum	cytosol, plastid	25.33	29.57
EES16518	Sorghum	cytosol	22.53	26.89
EES09233	Sorghum	cytosol	24.21	26.69
KXG22896	Sorghum	cytosol, plasma membrane	25.7	26.19
EES18409	Sorghum	cytosol	23.28	25.36
OQU77885	Sorghum	cytosol	22.72	25.31
OQU77884	Sorghum	plasma membrane	21.42	25.27
OQU81603	Sorghum	cytosol	15.83	23.74
KXG29713	Sorghum	cytosol	17.32	23.43
EER93592	Sorghum	cytosol	27.0	23.13
KXG23987	Sorghum	cytosol	22.35	22.86
KXG22822	Sorghum	mitochondrion	24.21	22.53
EER87757	Sorghum	mitochondrion	26.44	22.29
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	22.53	21.65
OQU76691	Sorghum	cytosol, extracellular	18.06	20.73
OQU82754	Sorghum	plastid	26.63	20.11

Protein Annotations

MapMan:15.5.12	MapMan:26.9.2.3	EntrezGene:8056128	UniProt:C5XFG6	ncoils:Coil	EnsemblPlants:EES01920
ProteinID:EES01920	ProteinID:EES01920.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF24
EnsemblPlantsGene:SORBI_3003G392800	InterPro:TF_GRAS	UniParc:UPI0001A850A2	RefSeq:XP_002456800.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:70399871..70401548

Molecular Weight (calculated)

57353.1 Da

IEP (calculated)

6.162

GRAVY (calculated)

-0.118

Length

537 amino acids

Sequence
(BLAST)

001: MGTSEQPCTS NLFTASSYGT SQQIHHLLPQ HDSVICTEPG MGFPYYYGTD QQDAAFDGDE VELGFQASKA TRVDYYSSPY QPSWPLARAA ATESSRVRKQ
101: RFRDVLESCK QKVEAMEAME SPVAFQEGED GLAVGDGGGA GAAAGGGAGA GGGNGGGADG MRLVQLLVAC AEAVACRDRA QAAALLRELQ AGAPVHGTAF
201: QRVASCFVQG LADRLALAHP PALGPASMAF CIPPSCTGRD GARGEALALA YELCPYLRFA HFVANASILE AFEGESNVHV LDLGMTLGLD RAHQWRGLLD
301: GLAARAGAKP ARVRVTAVGA PAETMRAVGR ELEAYAEGLG LCLEFRAIDR SLESLHMDDL GIAADEAVAI SSILELHCVV KESRGALNSV LQTIRKLSPK
401: AFVLVEQDAG HNGPFFLGRF MEALHYYAAV FDALDAALPR YDARRARVEQ FHFGAEIRNV VGCEGAARVE RHERADQWRR RMSRAGFQSV PIRMAARARE
501: WLEENAGGGG YTVAEEKGCL VLGWKGKPVI AASCWKS

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.