CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009646_P001	Maize	plastid	57.33	63.37
Os05t0574900-01	Rice	plasma membrane	45.71	48.0
TraesCS4B01G342800.1	Wheat	cytosol	39.62	47.27
TraesCS5A01G511900.1	Wheat	cytosol	38.86	46.79
OQU87235	Sorghum	extracellular	25.9	46.1
TraesCS1A01G413800.1	Wheat	cytosol, nucleus, plastid	41.14	44.81
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	41.71	44.79
TraesCS1D01G421200.1	Wheat	cytosol	41.9	43.31
KRG92263	Soybean	cytosol	31.62	41.6
TraesCS1B01G443800.1	Wheat	cytosol	40.95	41.59
HORVU1Hr1G090800.1	Barley	mitochondrion	41.14	40.3
KRH34544	Soybean	cytosol	32.95	35.45
KRH63032	Soybean	cytosol	33.71	35.19
KRH54840	Soybean	cytosol	33.71	35.05
VIT_11s0016g04630.t01	Wine grape	plastid	34.67	34.21
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	36.95	31.75
OQU83473	Sorghum	cytosol	24.76	30.81
EES02045	Sorghum	cytosol, plastid	23.81	27.23
KXG36498	Sorghum	cytosol, plastid	22.1	25.22
KXG29713	Sorghum	cytosol	19.05	25.19
EES16518	Sorghum	cytosol	21.52	25.11
EER93592	Sorghum	cytosol	29.71	24.88
EES09233	Sorghum	cytosol	22.48	24.23
EES18409	Sorghum	cytosol	22.67	24.14
OQU77884	Sorghum	plasma membrane	20.57	23.74
KXG22896	Sorghum	cytosol, plasma membrane	23.05	22.96
OQU81603	Sorghum	cytosol	15.62	22.91
OQU76691	Sorghum	cytosol, extracellular	20.0	22.44
EES01920	Sorghum	cytosol	22.86	22.35
OQU77885	Sorghum	cytosol	20.0	21.78
KXG22822	Sorghum	mitochondrion	23.62	21.49
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	20.95	19.68
EER87757	Sorghum	mitochondrion	22.86	18.84
OQU82754	Sorghum	plastid	24.95	18.42

Protein Annotations

EnsemblPlants:KXG23987	EnsemblPlantsGene:SORBI_3008G168400	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF7	PFAM:PF03514	PFscan:PS50985	ProteinID:KXG23987	ProteinID:KXG23987.1	SEG:seg
UniParc:UPI00081AE6A5	UniProt:A0A1B6PED4	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:60240296..60242072

Molecular Weight (calculated)

56668.6 Da

IEP (calculated)

6.551

GRAVY (calculated)

-0.099

Length

525 amino acids

Sequence
(BLAST)

001: MGHIPFTWLP MNPDAAAATL TADAAVPAAP IPIPTPTTTT DAAAMQHYYL NSWLHASLMQ PAVVQTATEE ARRRQDQEEE AASIRLVHLL ITCTGAIQAG
101: DYSVAHGNLT EARAILKKIP TSTGIGRVGT HFTDALAQRL FPAYPHAAAL PSCLPPATPP ATYNHFYDAG PYLKFAYSAA NRAILKAFEG CKRVHIIDFA
201: LMQGLQWPAL MEELSKREGG PPELRITGIG PNPTSGRDEL HEVGVRLAEF ARYMKIPFTF QGVCADHLDH LTAWIHLKLR PDEALAMNSI LQLHRLLVDP
301: DADESTMPAP IDILLKLVVK LKPKIFTVVE QEADHNKPRL LERFTNALFH YATMFDSLEA VCSAVNVSAA AARSSTNTST TSSLAEAYLR GEIFDIICGE
401: GNARLERHEL CTAWNERLTR AGFTQVEFNL SEANMEITEL INESSFSGAG FDILQGSGGL ALAWQGRPLY VATAWHAMGG GNAASAAIAH TKEGDSYQKG
501: KNSSGSGGGK GNRGRCGVAG GITFL

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.