CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052191	Potato	cytosol	61.85	69.6
TraesCS2D01G095300.1	Wheat	nucleus	89.81	53.01
TraesCS2B01G112100.1	Wheat	nucleus	89.81	53.01
TraesCS2A01G096800.1	Wheat	nucleus	89.81	53.01
Zm00001d049249_P001	Maize	plastid	91.23	49.68
GSMUA_Achr6P20830_001	Banana	nucleus	61.61	42.62
VIT_14s0068g01610.t01	Wine grape	plastid	64.45	40.72
KRG94590	Soybean	plastid	65.4	40.53
KRH06900	Soybean	plastid	64.69	39.8
OQU87235	Sorghum	extracellular	27.73	39.66
Solyc02g094340.1.1	Tomato	nucleus	63.27	39.26
KXG36498	Sorghum	cytosol, plastid	37.2	34.13
EES02045	Sorghum	cytosol, plastid	36.49	33.55
KXG29713	Sorghum	cytosol	29.86	31.74
EES01920	Sorghum	cytosol	40.05	31.47
KXG22896	Sorghum	cytosol, plasma membrane	38.15	30.55
EES18409	Sorghum	cytosol	34.36	29.41
OQU81603	Sorghum	cytosol	24.88	29.33
EES09233	Sorghum	cytosol	32.23	27.93
EES16518	Sorghum	cytosol	29.62	27.78
EER93592	Sorghum	cytosol	40.28	27.11
OQU76691	Sorghum	cytosol, extracellular	29.38	26.5
OQU77884	Sorghum	plasma membrane	27.01	25.05
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	32.94	24.87
KXG23987	Sorghum	cytosol	30.81	24.76
KXG22822	Sorghum	mitochondrion	33.18	24.26
OQU77885	Sorghum	cytosol	26.54	23.24
OQU82754	Sorghum	plastid	38.15	22.64
EER87757	Sorghum	mitochondrion	33.18	21.98

Protein Annotations

EnsemblPlants:OQU83473	EnsemblPlantsGene:SORBI_3005G123000	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF3	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU83473	ProteinID:OQU83473.1	SEG:seg
UniParc:UPI000B8BAD02	UniProt:A0A1Z5RI77	MapMan:15.5.12	MapMan:26.9.2.1	MapMan:26.9.2.3	:

Description

hypothetical protein

Coordinates

chr5:-:53841348..53845474

Molecular Weight (calculated)

45761.9 Da

IEP (calculated)

7.663

GRAVY (calculated)

-0.061

Length

422 amino acids

Sequence
(BLAST)

001: MTTLQHQMAK SDQWAAAADS SLHSMLGSVI QAEAEQEQDS GLQLVHLLLA CADFVSKGDQ PSALRHLHLL RRVASPLGDS MQRVASYFAD ALAARLTLSS
101: NPSSCSSSGG VATPRGGAGA GVAPYTFPPS PDTLKIYQIL YQACPYVKFA HFTANQAIFE AFHGEDRVHV VDLDILQGYQ WPAFLQALAA RPGGPPTLRL
201: TGVGHPSAAV RETGRHLASL AASLRVPFEF HAAVADRLER LRPGALQRRV GEALAVNAVN RLHRVPGVHL GPLLSMIRDQ APKIMTLVEQ EAGHNGPYFL
301: GRFLEALHYY SAIFDSLDAT FPADSAPRMK VEQCLLAPEI RNVVACEGAE RVARHERLDR WRRLMEGRGF EPVPLSPAAV GQSQVLLGLY GAGDGYRLTE
401: DKGCLLLGWQ DRAIIAASAW RC

Best Arabidopsis Sequence Match ( AT1G66350.1 )
(BLAST)

001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E

Arabidopsis Description

RGL1DELLA protein RGL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.