CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94653
EES01631
EES09201
EES16322
OQU78227
OQU90176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	EES01631	AT2G41100.1	17360592
AT5G41920.1	EES09201	AT2G41100.1	17360592
AT5G41920.1	EES16322	AT2G41100.1	17360592
AT5G41920.1	OQU78227	AT2G41100.1	17360592
AT5G41920.1	EER94653	AT4G37650.1	18500650
AT5G41920.1	OQU90176	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021826_P001	Maize	cytosol	95.22	96.9
Os07t0567700-02	Rice	cytosol	83.91	84.46
TraesCS2D01G208500.1	Wheat	cytosol	81.74	83.74
TraesCS2A01G200700.1	Wheat	cytosol	81.52	83.33
TraesCS2B01G228000.1	Wheat	cytosol	81.3	83.3
HORVU0Hr1G003230.2	Barley	mitochondrion	76.3	75.81
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	46.52	69.48
CDY64484	Canola	mitochondrion	36.96	69.11
Bra025456.1-P	Field mustard	mitochondrion	36.74	68.7
VIT_03s0017g01660.t01	Wine grape	plastid	63.48	66.06
KRH29089	Soybean	mitochondrion	61.52	64.03
PGSC0003DMT400030652	Potato	cytosol	57.17	63.99
KRH24117	Soybean	plastid	61.09	63.15
CDY27670	Canola	cytosol	54.13	61.63
Solyc07g043330.1.1	Tomato	plastid	57.83	61.57
AT5G41920.1	Thale cress	cytosol	54.13	61.48
KXG22896	Sorghum	cytosol, plasma membrane	49.35	43.07
OQU83473	Sorghum	cytosol	34.13	37.2
OQU82754	Sorghum	plastid	53.04	34.32
OQU87235	Sorghum	extracellular	21.74	33.9
EES18409	Sorghum	cytosol	33.26	31.03
KXG29713	Sorghum	cytosol	26.52	30.73
OQU81603	Sorghum	cytosol	22.83	29.33
EES02045	Sorghum	cytosol, plastid	28.91	28.98
OQU76691	Sorghum	cytosol, extracellular	26.3	25.85
EES01920	Sorghum	cytosol	29.57	25.33
OQU77884	Sorghum	plasma membrane	23.04	23.3
EES16518	Sorghum	cytosol	22.61	23.11
EES09233	Sorghum	cytosol	24.35	23.0
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	27.39	22.54
KXG23987	Sorghum	cytosol	25.22	22.1
EER93592	Sorghum	cytosol	29.78	21.85
KXG22822	Sorghum	mitochondrion	26.96	21.49
OQU77885	Sorghum	cytosol	21.74	20.75
EER87757	Sorghum	mitochondrion	28.26	20.41

Protein Annotations

MapMan:15.5.12	UniProt:A0A1B6QF06	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0048366	GO:GO:0090610	InterPro:IPR005202
EnsemblPlants:KXG36498	ProteinID:KXG36498	ProteinID:KXG36498.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF35	EnsemblPlantsGene:SORBI_3002G342800	InterPro:TF_GRAS	UniParc:UPI0003C6F498	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:70921883..70923265

Molecular Weight (calculated)

49277.7 Da

IEP (calculated)

5.988

GRAVY (calculated)

-0.059

Length

460 amino acids

Sequence
(BLAST)

001: MLQGVLSRAP ATDAAAAAAM KAKRSAASPG EEEEGDGRSA RGGKRQQLLA LGPATALASA VAAEEGPETR GLRLLSLLLR CAEAVAMDQL TEARELLPEI
101: AELASPFGSS PERVAAYFGD ALCARVLSSY LGAYSPLALR QLAAAQSRRV AVAFQAYNAL SPLVKFSHFT ANQAILQALD GEDCLHVIDL DIMQGLQWPG
201: LFHILASRPR KPRSLRITGL GASLDVLEAT GRRLADFAAS LGLPFEFHPI EGKIGHVADA AALLGSRQHQ NQQRDDEATV VHWMHHCLYD VTGSDVGTVR
301: LLRSLRPKLI TIVEQDLGHS GDFLGRFVEA LHYYSALFDA LGDGAGAAEE ESAERYAVER QLLGAEIRNI VAVGGPKRTG EVRVERWGDE LRRAGFRPVS
401: LAGSPATQAR LLLGMYPWKG YTLVEEDACL RLGWKDLSLL TASAWEPADD AAASAPTTTS

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.