CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97442
EES02157
EES14166
KXG21076
KXG22896
KXG26019
KXG36498
OQU82754
OQU83580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	EER97442	AT1G03840.1	17785527
AT4G37650.1	EES02157	AT1G03840.1	17785527
AT4G37650.1	EES14166	AT3G12280.1	22921914
AT4G37650.1	KXG21076	AT3G12280.1	22921914
AT4G37650.1	KXG26019	AT3G12280.1	22921914
AT4G37650.1	OQU83580	AT3G12280.1	22921914
AT4G37650.1	KXG22896	AT3G54220.1	17446396
AT4G37650.1	OQU82754	AT3G54220.1	17446396
AT4G37650.1	KXG22896	AT3G54220.1	17785527
AT4G37650.1	OQU82754	AT3G54220.1	17785527
AT4G37650.1	KXG22896	AT3G54220.1	18500650
AT4G37650.1	OQU82754	AT3G54220.1	18500650
AT4G37650.1	KXG22896	AT3G54220.1	22921914
AT4G37650.1	OQU82754	AT3G54220.1	22921914
AT4G37650.1	KXG36498	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021973_P001	Maize	nucleus	90.97	91.89
TraesCS2D01G194800.1	Wheat	cytosol, plastid	58.53	91.62
Os07t0586900-01	Rice	plastid	85.95	85.38
TraesCS2A01G192600.1	Wheat	plastid	82.94	83.5
TraesCS2B01G214600.1	Wheat	nucleus, plastid	81.44	81.85
HORVU2Hr1G035730.4	Barley	cytosol, plastid	62.54	62.75
GSMUA_Achr8P30950_001	Banana	mitochondrion	54.68	61.7
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	54.01	60.71
GSMUA_Achr4P16460_001	Banana	nucleus	53.18	59.89
EER94653	Sorghum	plastid	66.39	59.79
PGSC0003DMT400055239	Potato	nucleus	40.47	53.19
KRH77129	Soybean	plastid	42.31	53.15
KRH28353	Soybean	plastid	42.47	52.7
Bra010606.1-P	Field mustard	nucleus	40.3	51.5
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	41.81	50.61
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	42.81	50.49
CDY50264	Canola	nucleus, plastid	39.97	50.32
AT4G37650.1	Thale cress	cytosol, plastid	44.31	49.91
KRH04424	Soybean	plastid	41.97	49.9
CDX72645	Canola	cytosol, plastid	43.98	49.44
Bra017842.1-P	Field mustard	cytosol, plastid	43.98	49.44
KRH58109	Soybean	cytosol, plastid	40.97	49.1
Bra011777.1-P	Field mustard	cytosol, plastid	43.31	48.59
CDY44032	Canola	cytosol, plastid	42.31	48.19
EES18455	Sorghum	cytosol	24.41	34.43
EER97471	Sorghum	cytosol	23.91	31.43
KXG33889	Sorghum	cytosol	15.72	29.28
OQU92409	Sorghum	cytosol	21.4	23.06
EER97527	Sorghum	nucleus	18.39	20.0

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	UniProt:C5XD31	ProteinID:EER97462.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987
GO:GO:0043565	GO:GO:0045930	GO:GO:0048366	GO:GO:0055072	InterPro:IPR005202	EnsemblPlants:OQU90176
ProteinID:OQU90176	ProteinID:OQU90176.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF9
EnsemblPlantsGene:SORBI_3002G357800	unigene:Sbi.13484	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI0001A837CE	RefSeq:XP_002460941.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:72028173..72031361

Molecular Weight (calculated)

64478.5 Da

IEP (calculated)

5.584

GRAVY (calculated)

-0.357

Length

598 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL QASEQQQQQQ QQSASYNSRS TTSSGSRSSS HQTNASYNYY YHSTSSGGGG GGGGQYYYGQ QHQHQHQQYY LEPYQQEECG NAHHLYMDED
101: FSSSSSSRQH FHSHGAAVQP PTSSAATPTA PTPPLSTSST AAGAAHALFE AADLSFPPDL NLDFSSPASS SGGGAASSAA VGVGGGGGGR WASQLLLECA
201: RAVAARDSQR VQQLMWMLNE LASPYGDVEQ KLASYFLQGL FARLTASGPR TLRTLAAASD RNTSFDSTRR TALRFQELSP WSSFGHVAAN GAILESFLEA
301: AAASSEPQRF HILDLSNTFC TQWPTLLEAL ATRSADDTPH LSITTVVSAA PSAPTAAVQR VMREIGQRME KFARLMGVPF SFRAVHHAGD LAELDLDALD
401: LRDGGATTAL AVNCVNSLRG VVPGAARRRD AFAASLRRLD PRVVTVVEEE ADLVAFDPDT SEESGDTEAA FLKVFGEGLR FFSAYMDSLE ESFPKTSNER
501: LALERGAGRA IVDLVSCPAS ESMERRETAV SWARRMRSAG FSPVAFSEDV ADDVRSLLRR YREGWSMRDA GLDDSAAGAG VFLAWKEQPL VWASAWRP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.