CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94653
EES02045
EES09233
EES14166
EES16518
KXG21076
KXG22822
KXG22896
KXG26019
OQU77884
OQU77885
OQU82754
OQU83580
OQU90176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	KXG22896	AT3G54220.1	17785527
AT1G03840.1	OQU82754	AT3G54220.1	17785527
AT1G03840.1	EER94653	AT4G37650.1	17785527
AT1G03840.1	OQU90176	AT4G37650.1	17785527
AT5G44160.1	EES02045	AT1G50420.1	21798944
AT5G44160.1	EES09233	AT1G50420.1	21798944
AT5G44160.1	EES16518	AT1G50420.1	21798944
AT5G44160.1	KXG22822	AT1G50420.1	21798944
AT5G44160.1	OQU77884	AT1G50420.1	21798944
AT5G44160.1	OQU77885	AT1G50420.1	21798944
AT5G44160.1	EES14166	AT3G12280.1	22921914
AT5G44160.1	KXG21076	AT3G12280.1	22921914
AT5G44160.1	KXG26019	AT3G12280.1	22921914
AT5G44160.1	OQU83580	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039254_P001	Maize	nucleus	59.67	81.07
CDY14910	Canola	nucleus	21.62	78.2
Os01t0242200-01	Rice	nucleus	64.24	74.46
CDY72283	Canola	nucleus	28.27	71.96
Bra036013.1-P	Field mustard	nucleus	23.49	71.52
TraesCS3B01G195900.1	Wheat	nucleus	68.61	67.21
TraesCS3A01G170700.1	Wheat	nucleus	68.19	67.08
TraesCS3D01G171300.1	Wheat	nucleus	67.98	66.6
Bra015271.1-P	Field mustard	nucleus	49.27	49.17
CDX89862	Canola	nucleus	49.06	49.17
CDY18188	Canola	nucleus	48.65	48.85
Zm00001d009030_P002	Maize	nucleus	45.32	48.77
Bra033724.1-P	Field mustard	nucleus	46.36	48.06
CDY22307	Canola	nucleus	46.15	47.84
Bra032541.1-P	Field mustard	nucleus	48.65	47.76
CDY32514	Canola	nucleus	48.65	47.76
AT5G44160.1	Thale cress	nucleus	46.15	47.64
CDX94759	Canola	nucleus	45.95	47.63
AT1G03840.1	Thale cress	nucleus	49.9	47.43
VIT_12s0028g03030.t01	Wine grape	nucleus	41.79	47.07
PGSC0003DMT400024272	Potato	nucleus	45.32	44.04
Solyc07g053570.2.1	Tomato	nucleus	45.74	43.82
KRH49655	Soybean	nucleus	31.39	41.71
KRH25657	Soybean	nucleus	39.29	40.13
KRH22332	Soybean	nucleus	39.29	39.87
KRH55868	Soybean	nucleus	38.88	39.45
EES02307	Sorghum	nucleus	40.75	39.36
KRH26995	Soybean	nucleus	38.88	38.96
EES00944	Sorghum	nucleus	38.05	38.05
EER95332	Sorghum	nucleus	41.37	37.9
KXG38489	Sorghum	nucleus	33.26	37.38
EES05153	Sorghum	nucleus	36.17	35.44
EES04172	Sorghum	nucleus	38.25	35.38
KXG30322	Sorghum	nucleus	34.93	35.37
OQU89911	Sorghum	nucleus, plastid	38.25	34.52
KXG25416	Sorghum	nucleus	38.88	33.82
KXG31026	Sorghum	nucleus	41.37	33.45
EES11271	Sorghum	nucleus	41.16	33.06
KXG36163	Sorghum	nucleus	34.93	28.87
KXG39813	Sorghum	nucleus, plastid	25.36	26.58
EER96827	Sorghum	nucleus	25.78	24.85
EES13982	Sorghum	nucleus	25.99	23.32
EER97442	Sorghum	nucleus	36.8	22.58

Protein Annotations

EnsemblPlants:EES02157	EnsemblPlantsGene:SORBI_3003G001300	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26	PFAM:PF00096
PFscan:PS50157	ProteinID:EES02157	ProteinID:EES02157.2	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI00081ABB71	UniProt:C5XJH3	MapMan:15.5.15	:	:

Description

hypothetical protein

Coordinates

chr3:-:131548..133952

Molecular Weight (calculated)

50436.1 Da

IEP (calculated)

9.239

GRAVY (calculated)

-0.307

Length

481 amino acids

Sequence
(BLAST)

001: MASEAAPAAA ASIISNNNPC LFAAPLTNHQ QQQQQLALPP PAKKKRSLPG TPDPDAEVIA LSPRTLLATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL
101: RQRSGKEPRK RVYVCPEKTC VHHNPSRALG DLTGIKKHFC RKHGEKKWKC DKCNKRYAVQ SDWKAHAKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA
201: EETARLNAAS SAGAATSYLF AGSPPGLHPN MMLPPAPAPA PAPGPHLKPL GPHVVGGLSL WGGGDALPSM VGHIGATGGI LLPGGEPAVP PQLYADLFSP
301: APPQLGWLCG NGSKLASSNA SELTSAAAAS GKQDTDSVFS GQHHAKPTAP AADMSATALL QKAAQMGAVT SGSGNAMSMP PGALEPADIG HHQSSDGAGG
401: LLFSASSQQN ATNLRLRGTD TTLIMSHLTA AAAGNMPYDV LSAVRHAGLK DAAVAVGREE TRDFLGVGVQ ALCSSSLNGW I

Best Arabidopsis Sequence Match ( AT5G44160.1 )
(BLAST)

001: MTSEVLQTIS SGSGFAQPQS SSTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPTTL MATNRFLCEV CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK
101: EVRKRVYVCP EKTCVHHHSS RALGDLTGIK KHFCRKHGEK KWTCEKCAKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETAKI
201: NAVSHLNGLA AAGAPGSVNL NYQYLMGTFI PPLQPFVPQP QTNPNHHHQH FQPPTSSSLS LWMGQDIAPP QPQPDYDWVF GNAKAASACI DNNNTHDEQI
301: TQNANASLTT TTTLSAPSLF SSDQPQNANA NSNVNMSATA LLQKAAEIGA TSTTTAATND PSTFLQSFPL KSTDQTTSYD SGEKFFALFG SNNNIGLMSR
401: SHDHQEIENA RNDVTVASAL DELQNYPWKR RRVDGGGEVG GGGQTRDFLG VGVQTLCHPS SINGWI

Arabidopsis Description

NUCZinc finger protein NUTCRACKER [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.