CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05153	Sorghum	nucleus	89.05	86.15
Zm00001d016632_P001	Maize	nucleus	90.32	84.45
Os02t0518500-00	Rice	nucleus	82.74	79.88
TraesCS4D01G294900.1	Wheat	nucleus	80.42	78.93
TraesCS4A01G008900.1	Wheat	nucleus	80.21	78.56
TraesCS4B01G296200.1	Wheat	nucleus	79.79	78.31
TraesCS2D01G287500.1	Wheat	nucleus	65.26	67.25
TraesCS2A01G289500.1	Wheat	nucleus	65.89	64.8
TraesCS2B01G306100.1	Wheat	nucleus	65.68	64.6
VIT_09s0054g01820.t01	Wine grape	nucleus	31.58	38.07
EES02307	Sorghum	nucleus	37.89	36.14
KXG38489	Sorghum	nucleus	31.79	35.28
EES02157	Sorghum	nucleus	35.37	34.93
EES00944	Sorghum	nucleus	33.89	33.47
EER95332	Sorghum	nucleus	35.79	32.38
KXG25416	Sorghum	nucleus	35.16	30.2
OQU89911	Sorghum	nucleus, plastid	33.47	29.83
EES04172	Sorghum	nucleus	31.79	29.04
EES11271	Sorghum	nucleus	36.21	28.71
KXG31026	Sorghum	nucleus	35.37	28.24
KXG36163	Sorghum	nucleus	33.47	27.32
KXG39813	Sorghum	nucleus, plastid	22.32	23.09
EER96827	Sorghum	nucleus	23.16	22.04
EES13982	Sorghum	nucleus	23.37	20.71
EER97442	Sorghum	nucleus	32.84	19.9

Protein Annotations

EnsemblPlants:KXG30322	EnsemblPlantsGene:SORBI_3004G162700	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF48	PFscan:PS50157
ProteinID:KXG30322	ProteinID:KXG30322.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0007F19B22	UniProt:A0A194YQ55	MapMan:15.5.15	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:51190561..51193943

Molecular Weight (calculated)

52282.5 Da

IEP (calculated)

8.099

GRAVY (calculated)

-0.623

Length

475 amino acids

Sequence
(BLAST)

001: MSHTSEEESL NNFQQQAKLE ACPAGPTKAD TAMPVVKKRR GHPGILDADV EVVALSPKTL LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST
101: EAKKKVYVCP EVTCPHHDGS RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK DSFITHRAFC DALAEDNSKV
201: NHSLATMVGN LHGHHHDIFS HGVPTFPTSP TDVMANLSNT LITRNTTLFS NQMSPKDSGF PLDGSASSYP YMSMNSPYMS ATALLQKAAV IGAKTSQDPI
301: SPLLLKSFPS NVTTPSPRDH MDISSGSQGD SLGNSAANSI GIKAAEDEGS YMSGRGNILM NTPWVNSYRP TTVPLIGLMN HPFGMRAEKE SSGLFSGSQT
401: QHNRQENISG VGDVGLTQDF LGLGGSGNLE MSSETYNADV TQLSYSDEQQ KSHEHMYSYH QSSLDSIALE KPIWE

Best Arabidopsis Sequence Match ( AT3G50700.1 )
(BLAST)

001: MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS

Arabidopsis Description

IDD2Protein indeterminate-domain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.