Factsheet for VIT_09s0054g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g03030.t01	Wine grape	nucleus	37.31	34.43
TraesCS2D01G287500.1	Wheat	nucleus	37.56	32.1
KXG30322	Sorghum	nucleus	38.07	31.58
EES05153	Sorghum	nucleus	38.83	31.16
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	34.77	30.93
TraesCS4B01G296200.1	Wheat	nucleus	37.56	30.58
TraesCS4D01G294900.1	Wheat	nucleus	37.56	30.58
TraesCS2B01G306100.1	Wheat	nucleus	37.31	30.43
TraesCS4A01G008900.1	Wheat	nucleus	37.31	30.31
VIT_04s0023g01430.t01	Wine grape	nucleus	38.83	30.24
TraesCS2A01G289500.1	Wheat	nucleus	37.06	30.23
Os02t0518500-00	Rice	nucleus	37.56	30.08
Zm00001d016632_P001	Maize	nucleus	38.58	29.92
VIT_08s0040g02100.t01	Wine grape	nucleus	37.31	29.88
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	37.56	29.84
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	39.85	29.57
VIT_04s0008g01160.t01	Wine grape	nucleus	38.83	29.09
VIT_06s0004g03070.t01	Wine grape	nucleus	36.04	28.46
VIT_09s0002g02300.t01	Wine grape	nucleus	37.82	28.01
VIT_01s0010g02100.t01	Wine grape	nucleus	38.07	26.22
VIT_01s0011g06400.t01	Wine grape	nucleus	27.16	25.18
VIT_07s0104g01620.t01	Wine grape	nucleus	36.29	23.91
VIT_17s0000g01870.t01	Wine grape	nucleus	26.65	23.08
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	37.82	22.54

Protein Annotations

EntrezGene:100258126	wikigene:100258126	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:AM452053	ProteinID:CAN74343
ProteinID:CAN74343.1	ProteinID:CBI18351	ProteinID:CBI18351.3	UniProt:D7SRR9	EMBL:FN594972	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	EntrezGene:LOC100258126	wikigene:LOC100258126	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF48	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00015CA994
ArrayExpress:VIT_09s0054g01820	EnsemblPlantsGene:VIT_09s0054g01820	EnsemblPlants:VIT_09s0054g01820.t01	RefSeq:XP_002270688	RefSeq:XP_002270688.2	RefSeq:XP_010655211.1
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:22904970..22906292

Molecular Weight (calculated)

43286.8 Da

IEP (calculated)

8.424

GRAVY (calculated)

-0.578

Length

394 amino acids

Sequence
(BLAST)

001: MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSNT EVKKRVYVCP EPNCVHHDPS RALGDLTGIK KHFCRKHGEK RWKCDKCSKR YAVQSDWKAH
101: TKICGTREYR CDCGTIFSRK DSFVTHRAFC DASAAENYKA NQQIAAAGGT PHNQPQVLFS SSMPTSESSS GANMSMNLSV FNENIDNITR PASLNSPGLT
201: ISNNLNQIFN PTTSQECFGS GIGSNNSPMG IGSTYTSATA LLQKAAEMGA KISDNSIAPV LFRGFTGYSV GSTNSCGSVQ ETSSVISCSM GPVSATANGL
301: YVGNQETFNK DLDAVDVRPS YAVSHSGLFD SSLFMQMKNQ NPADRLEELF MGDGEKMTVD FLGVEPTAYP SNGKKRSYDG NFMGLEYSNT QQNL

Best Arabidopsis Sequence Match ( AT1G55110.1 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.