Factsheet for VIT_09s0002g02300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37489	Canola	nucleus	25.56	73.91
KRH47108	Soybean	nucleus	61.47	65.66
KRH10015	Soybean	nucleus	57.52	64.42
KRH44134	Soybean	nucleus	62.78	63.02
KRH23306	Soybean	nucleus	56.02	62.08
PGSC0003DMT400006385	Potato	nucleus	61.65	60.63
Solyc03g121660.2.1	Tomato	nucleus	61.28	60.15
VIT_12s0028g03030.t01	Wine grape	nucleus	37.22	46.37
VIT_04s0008g01160.t01	Wine grape	nucleus	45.68	46.2
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	37.59	45.15
Zm00001d008842_P001	Maize	nucleus	39.1	44.54
CDX75732	Canola	nucleus	36.84	44.24
TraesCS3D01G107300.1	Wheat	nucleus	40.41	44.06
TraesCS3A01G105100.1	Wheat	nucleus	40.98	43.95
CDX82515	Canola	nucleus	36.28	43.76
Solyc06g062670.2.1	Tomato	nucleus	41.35	43.74
PGSC0003DMT400012504	Potato	nucleus	41.17	43.63
Os01t0195000-01	Rice	nucleus	39.85	43.53
TraesCS3B01G123600.1	Wheat	nucleus	40.6	43.46
Zm00001d039467_P001	Maize	nucleus	40.04	42.86
EES02307	Sorghum	nucleus	40.04	42.77
CDY51742	Canola	nucleus	37.97	41.74
VIT_08s0040g02100.t01	Wine grape	nucleus	38.53	41.67
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	38.72	41.53
CDX97521	Canola	nucleus	37.59	41.24
CDY55238	Canola	nucleus	37.59	41.15
VIT_04s0023g01430.t01	Wine grape	nucleus	38.91	40.91
Bra027394.1-P	Field mustard	nucleus	37.78	39.8
Bra021510.1-P	Field mustard	nucleus	37.97	39.61
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	39.29	39.36
VIT_06s0004g03070.t01	Wine grape	nucleus	36.84	39.28
VIT_01s0010g02100.t01	Wine grape	nucleus	41.17	38.29
Bra001523.1-P	Field mustard	nucleus	36.84	38.28
VIT_09s0054g01820.t01	Wine grape	nucleus	28.01	37.82
AT3G13810.2	Thale cress	nucleus	36.28	37.55
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	40.98	32.98
VIT_01s0011g06400.t01	Wine grape	nucleus	25.38	31.76
VIT_07s0104g01620.t01	Wine grape	nucleus	35.15	31.27
VIT_17s0000g01870.t01	Wine grape	nucleus	24.06	28.13

Protein Annotations

EntrezGene:100246360	wikigene:100246360	EntrezGene:109123222	MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A5BN05
EMBL:AM465183	ProteinID:CAN79105	ProteinID:CAN79105.1	ProteinID:CCB59347	ProteinID:CCB59347.1	EMBL:FN596494
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	EntrezGene:LOC100246360	wikigene:LOC100246360
PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF49	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI0001524646	ArrayExpress:VIT_09s0002g02300	EnsemblPlantsGene:VIT_09s0002g02300	EnsemblPlants:VIT_09s0002g02300.t01	unigene:Vvi.11475
RefSeq:XP_002280155	RefSeq:XP_002280155.2	RefSeq:XP_019077826.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

No Description!

Coordinates

chr9:-:2108411..2110849

Molecular Weight (calculated)

57222.0 Da

IEP (calculated)

9.339

GRAVY (calculated)

-0.625

Length

532 amino acids

Sequence
(BLAST)

001: MSNLTSASGE ASVSSGNRAE TAPMYPQQQY FAPPNQAQAQ VQAQPSVKKK RNLPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN
101: LPWKLKQRTS KEVRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF
201: CDALAEESAR AITGNPVLLS SQAAAGPSSS TPHSHSQMSL QQQQQFNSNH DFHAFQMKKE QQSFSIRSEV VPPWLSSSSS LFPTRLDHDF TQTTQDLALH
301: DIQNPNPNPS LGPTLPPYHP TLSPHMSATA LLQKAAQMGA TMSKTTGGSG ASPPAMIRPH QAHVSADHSC NNTTGFGLNL SSREEMGGGF VQGLAPFGNK
401: AAAVPSAAAA AAAATGPGGG APSPSLLLQD MMTSLSSATG FDSSSFEDAF GGMLNSRKNG NNLHQTLPSK STTTTATTHH SSGGAGNDGL TRDFLGLRAL
501: SHSDILSIAG LGTCMNTSPH DHQNQTQKPW QG

Best Arabidopsis Sequence Match ( AT3G13810.4 )
(BLAST)

001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG

Arabidopsis Description

AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.