Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G107300.1 | Wheat | nucleus | 95.36 | 96.93 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 96.77 | 96.58 |
| Zm00001d039467_P001 | Maize | nucleus | 72.58 | 72.43 |
| Zm00001d008842_P001 | Maize | nucleus | 67.74 | 71.95 |
| EES02307 | Sorghum | nucleus | 71.37 | 71.08 |
| Os01t0195000-01 | Rice | nucleus | 68.55 | 69.82 |
| CDY70142 | Canola | nucleus | 21.37 | 58.24 |
| KRH47108 | Soybean | nucleus | 45.16 | 44.98 |
| KRH10015 | Soybean | nucleus | 41.33 | 43.16 |
| KRH23306 | Soybean | nucleus | 41.53 | 42.92 |
| Bra030886.1-P | Field mustard | nucleus | 37.3 | 42.33 |
| KRH44134 | Soybean | nucleus | 45.16 | 42.26 |
| TraesCS3A01G205800.1 | Wheat | nucleus | 40.32 | 41.93 |
| AT1G55110.2 | Thale cress | nucleus | 38.1 | 41.54 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 43.95 | 40.98 |
| TraesCS6A01G126000.1 | Wheat | nucleus | 33.87 | 40.19 |
| TraesCS3A01G170700.1 | Wheat | nucleus | 38.71 | 39.26 |
| TraesCS4A01G041400.1 | Wheat | nucleus | 36.9 | 37.58 |
| PGSC0003DMT400006385 | Potato | nucleus | 40.93 | 37.52 |
| Solyc03g121660.2.1 | Tomato | nucleus | 40.93 | 37.45 |
| TraesCS4A01G008900.1 | Wheat | nucleus | 36.09 | 36.91 |
| PGSC0003DMT400012504 | Potato | nucleus | 37.3 | 36.85 |
| Solyc06g062670.2.1 | Tomato | nucleus | 37.3 | 36.78 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 40.12 | 36.51 |
| TraesCS2A01G289500.1 | Wheat | nucleus | 33.87 | 34.78 |
| TraesCS6A01G254500.1 | Wheat | nucleus | 39.11 | 33.56 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 40.73 | 30.47 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 24.8 | 29.64 |
| CDY70938 | Canola | cytosol, nucleus | 16.13 | 29.3 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 23.59 | 23.83 |
| TraesCS2A01G188400.2 | Wheat | nucleus | 36.29 | 21.69 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G105100.1 | EnsemblPlantsGene:TraesCS3A01G105100 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr3A:-:68867954..68869669
Molecular Weight (calculated)
52711.6 Da
IEP (calculated)
8.675
GRAVY (calculated)
-0.567
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLKDFAAIQ QQQQQQQLAL AADENMSNLT SASGDQTSVS SHPLPPPSKK KRSLPGNPDP DAEVIALSPR ALMATNRYVC EICGKGFQRD QNLQLHRRGH
101: NLPWKLKQRN PNEVVRKKVY VCPEPGCVHH DRSRALGDLT GIKKHFSRKH GEKKWKCDKC AKRYAVQSDW KAHSKVCGTR EYRCDCGTLF SRRDSFITHR
201: AFCDALAEES ARAVAVEEQQ HPGMLYSHGG GGAAFQMPAV MDPSSSLGGG HGLIQELCLK REREQQQQQQ QFVQPWLSEQ QQLEMGGEGA QAMFGTARME
301: QEFNASSTPE SSTQPVGMSF ASFPSSSAAP SAAGATGSSH MSATALLQKA AQMGATLSRP SGQGQMAAST FSSSSSSAAI TNVTNNAPAA ATSSSAATST
401: AVGVGFGHAF EAPAHFGVDP RPTASRNAGN AGASGGGRGN AGGANDGLTR DFLGLRAFSH GDLLSMAGFD PCMPTSASAR AAYDQQGPQS SNPWHG
101: NLPWKLKQRN PNEVVRKKVY VCPEPGCVHH DRSRALGDLT GIKKHFSRKH GEKKWKCDKC AKRYAVQSDW KAHSKVCGTR EYRCDCGTLF SRRDSFITHR
201: AFCDALAEES ARAVAVEEQQ HPGMLYSHGG GGAAFQMPAV MDPSSSLGGG HGLIQELCLK REREQQQQQQ QFVQPWLSEQ QQLEMGGEGA QAMFGTARME
301: QEFNASSTPE SSTQPVGMSF ASFPSSSAAP SAAGATGSSH MSATALLQKA AQMGATLSRP SGQGQMAAST FSSSSSSAAI TNVTNNAPAA ATSSSAATST
401: AVGVGFGHAF EAPAHFGVDP RPTASRNAGN AGASGGGRGN AGGANDGLTR DFLGLRAFSH GDLLSMAGFD PCMPTSASAR AAYDQQGPQS SNPWHG
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.