Factsheet for Solyc06g062670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012504	Potato	nucleus	96.22	96.41
CDY70142	Canola	nucleus	20.48	56.59
KRH47108	Soybean	nucleus	44.33	44.78
KRH10015	Soybean	nucleus	41.95	44.42
Solyc08g063040.2.1	Tomato	nucleus	41.15	44.33
KRH23306	Soybean	nucleus	41.55	43.54
Solyc03g121660.2.1	Tomato	nucleus	46.52	43.17
KRH44134	Soybean	nucleus	44.53	42.26
VIT_09s0002g02300.t01	Wine grape	nucleus	43.74	41.35
Zm00001d008842_P001	Maize	nucleus	36.78	39.61
Bra030886.1-P	Field mustard	nucleus	34.39	39.59
Solyc01g099340.2.1	Tomato	nucleus	33.0	39.15
Solyc09g007550.2.1	Tomato	nucleus, plastid	35.39	38.78
AT1G55110.2	Thale cress	nucleus	34.79	38.46
EES02307	Sorghum	nucleus	37.97	38.35
Zm00001d039467_P001	Maize	nucleus	37.77	38.23
Os01t0195000-01	Rice	nucleus	36.78	37.99
Solyc11g069240.1.1	Tomato	nucleus	33.6	37.64
TraesCS3D01G107300.1	Wheat	nucleus	36.38	37.5
TraesCS3A01G105100.1	Wheat	nucleus	36.78	37.3
TraesCS3B01G123600.1	Wheat	nucleus	36.38	36.82
Solyc10g084180.1.1	Tomato	nucleus	35.98	36.71
Solyc09g065670.2.1	Tomato	nucleus	34.0	36.38
Solyc07g053570.2.1	Tomato	nucleus	35.39	35.46
Solyc04g080130.2.1	Tomato	nucleus	35.19	35.33
Solyc06g075250.2.1	Tomato	nucleus, plastid	36.98	35.23
Solyc04g008500.2.1	Tomato	nucleus	34.99	34.04
Solyc01g005060.2.1	Tomato	nucleus	22.47	33.33
Solyc09g074780.2.1	Tomato	nucleus, plastid	34.19	33.08
Solyc05g054030.2.1	Tomato	nucleus	23.06	30.45
Solyc06g072360.2.1	Tomato	nucleus	23.46	30.1
Solyc02g062940.2.1	Tomato	nucleus	34.39	26.37
CDY70938	Canola	cytosol, nucleus	13.72	25.27
Solyc03g098070.2.1	Tomato	nucleus	17.5	24.18

Protein Annotations

EnsemblPlants:Solyc06g062670.2.1	EnsemblPlantsGene:Solyc06g062670.2	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF59	PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000276694C	UniProt:K4C6Z8	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr6:-:39553454..39556636

Molecular Weight (calculated)

56298.1 Da

IEP (calculated)

8.591

GRAVY (calculated)

-0.670

Length

503 amino acids

Sequence
(BLAST)

001: MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK
101: RENKEVVRKK VYICPESSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT IFSRRDSFIT HRAFCETLAM
201: ESARSVINER NPTIFSPQMN LQFQQPHYFN SHEQIQAATF PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINPSPSVP LSNFSSSSIF PATTRLDQQY
301: SQSSHKDLNL HHQNPNPNLR GPTLGYDSMG ESGVVSPVHI SATALLQKAA QFGATISNKA SAVTATAAYT GTAKIPHNTH VSVTSTDSAT KQTQQKLSSR
401: EDLTTITGPA NNISGIMTSF SNGFDGSTMF EDAILFGGFN NLNSKKENED EDQQLYFNGS MNEEDHILTK DFLGLKPLSH TDDIFNIAAL VNTEFKNHKT
501: WQS

Best Arabidopsis Sequence Match ( AT3G13810.4 )
(BLAST)

001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG

Arabidopsis Description

AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.