Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013174 | Potato | nucleus | 96.01 | 95.06 |
| VIT_18s0001g12220.t01 | Wine grape | nucleus, plastid | 48.3 | 48.79 |
| KRH61193 | Soybean | nucleus | 43.91 | 46.51 |
| KRH51873 | Soybean | nucleus | 43.11 | 46.06 |
| Solyc01g099340.2.1 | Tomato | nucleus | 33.93 | 40.09 |
| Solyc08g063040.2.1 | Tomato | nucleus | 36.93 | 39.61 |
| Solyc11g069240.1.1 | Tomato | nucleus | 34.33 | 38.31 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 34.93 | 38.13 |
| Solyc09g065670.2.1 | Tomato | nucleus | 34.13 | 36.38 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 37.52 | 36.15 |
| Solyc10g084180.1.1 | Tomato | nucleus | 35.33 | 35.9 |
| Solyc07g053570.2.1 | Tomato | nucleus | 35.93 | 35.86 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 37.33 | 35.42 |
| Solyc03g121660.2.1 | Tomato | nucleus | 38.12 | 35.24 |
| Solyc06g062670.2.1 | Tomato | nucleus | 35.33 | 35.19 |
| Solyc04g008500.2.1 | Tomato | nucleus | 35.53 | 34.43 |
| Solyc01g005060.2.1 | Tomato | nucleus | 22.95 | 33.92 |
| Solyc02g062940.2.1 | Tomato | nucleus | 43.91 | 33.54 |
| Solyc05g054030.2.1 | Tomato | nucleus | 22.95 | 30.18 |
| Solyc06g072360.2.1 | Tomato | nucleus | 23.15 | 29.59 |
| Solyc03g098070.2.1 | Tomato | nucleus | 18.76 | 25.82 |
Protein Annotations
| EnsemblPlants:Solyc04g080130.2.1 | EnsemblPlantsGene:Solyc04g080130.2 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF100 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000276565E |
| UniProt:K4BV92 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:64384821..64387915
Molecular Weight (calculated)
54296.0 Da
IEP (calculated)
8.101
GRAVY (calculated)
-0.477
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEIEKSAEE SIIQQNFPVK RKRNLPGNPD PEAEVIALSP RTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSNEVKKRVY VCPESSCVHH
101: DPSRALGDLT GIKKHFCRKH GEKKFKCERC TKKYAVHSDW KAHMKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARSHQPLMED TNAEGDLKVD
201: EAINKTVSSS SSPPPQPLTP STSVLSPVLS IQSSELPVEY QNQGGVQIQQ AQGTTTPVST TPVITISTAA ASGPSSSKVF ASVFPSSSSA QHVNSSYSDI
301: LRAIETEQVM AVEPISLSLS SSLYLSNNRA SLFQEHTGGH GHGHGQHYGS ATMQPALSAT ALLQKAAQMG STTSNNSFLR GLGLAMSPST STPEENSLAR
401: RTNALGHVKL ESNINAEVPG LGIQLHGHSG FTDLMMGPSI SHQTSMMFGS KPPTLDFLGL GNGASGTPSN GFSAFLSSME DGFGVVAEPW DDPSDRKPAM
501: L
101: DPSRALGDLT GIKKHFCRKH GEKKFKCERC TKKYAVHSDW KAHMKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARSHQPLMED TNAEGDLKVD
201: EAINKTVSSS SSPPPQPLTP STSVLSPVLS IQSSELPVEY QNQGGVQIQQ AQGTTTPVST TPVITISTAA ASGPSSSKVF ASVFPSSSSA QHVNSSYSDI
301: LRAIETEQVM AVEPISLSLS SSLYLSNNRA SLFQEHTGGH GHGHGQHYGS ATMQPALSAT ALLQKAAQMG STTSNNSFLR GLGLAMSPST STPEENSLAR
401: RTNALGHVKL ESNINAEVPG LGIQLHGHSG FTDLMMGPSI SHQTSMMFGS KPPTLDFLGL GNGASGTPSN GFSAFLSSME DGFGVVAEPW DDPSDRKPAM
501: L
001: MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS
Arabidopsis Description
IDD2Protein indeterminate-domain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCQ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.