Factsheet for VIT_18s0001g12220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g01430.t01	Wine grape	nucleus	59.27	58.1
KRH51873	Soybean	nucleus	46.17	48.83
KRH61193	Soybean	nucleus	46.37	48.63
Solyc04g080130.2.1	Tomato	nucleus	48.79	48.3
PGSC0003DMT400013174	Potato	nucleus	48.79	47.83
VIT_12s0028g03030.t01	Wine grape	nucleus	40.32	46.84
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	38.91	43.57
VIT_08s0040g02100.t01	Wine grape	nucleus	40.32	40.65
VIT_06s0004g03070.t01	Wine grape	nucleus	40.73	40.48
VIT_09s0002g02300.t01	Wine grape	nucleus	41.53	38.72
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	40.32	37.66
VIT_04s0008g01160.t01	Wine grape	nucleus	39.92	37.64
VIT_09s0054g01820.t01	Wine grape	nucleus	29.84	37.56
VIT_01s0010g02100.t01	Wine grape	nucleus	41.13	35.66
VIT_07s0104g01620.t01	Wine grape	nucleus	40.93	33.95
VIT_01s0011g06400.t01	Wine grape	nucleus	27.82	32.47
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	41.33	31.01
VIT_17s0000g01870.t01	Wine grape	nucleus	25.81	28.13

Protein Annotations

EntrezGene:100260826	wikigene:100260826	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CBI19670	ProteinID:CBI19670.3
UniProt:E0CQ24	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EntrezGene:LOC100260826	wikigene:LOC100260826	PFAM:PF12874	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF100	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0001BE1AD5	ArrayExpress:VIT_18s0001g12220	EnsemblPlantsGene:VIT_18s0001g12220
EnsemblPlants:VIT_18s0001g12220.t01	unigene:Vvi.22494	RefSeq:XP_002281605	RefSeq:XP_002281605.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:10395336..10398382

Molecular Weight (calculated)

51865.3 Da

IEP (calculated)

9.506

GRAVY (calculated)

-0.325

Length

496 amino acids

Sequence
(BLAST)

001: MTVSTASREA SVTSSGNQTA PQPVAPTKKK RNLPGTPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEVRKRVYVC
101: PEPTCVHHDP TRALGDLTGI KKHFCRKHGE KKWKCERCSK KYAVQSDWKA HLKTCGTREY KCDCGTLFSR RDSFITHRAF CDALAQESAR AQVLPSTNTE
201: ENPEIETAVS SSPTALSPST TVLSIQSPGA DMTENPVGVL QQAPATISLT TGTVTSSSSS STSVFASIFA PSTTPVTSQP PQSSSTFSDL ICAMGRSKRS
301: TTLPSSSTAE PTLRLSSSLY LSNSASSLFP TPDQNHRHYA PSPQPAMSAT ALLQKAAQMG AAASNASLLR GLGLAMSPSS SAQQDSSTTQ WSGHVKADSN
401: PVGAGLGLGL PSEGGPALTG LMMSPSSLFV NKPTTLDLLG LGMVPGGAST AGLSALLTSI SGGGLDIAAA GSPFGGAAAA TAEAAPDRKP NGPALL

Best Arabidopsis Sequence Match ( AT5G66730.1 )
(BLAST)

001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS

Arabidopsis Description

IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.