Factsheet for VIT_04s0008g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15560	Soybean	nucleus	44.3	57.11
KRH05443	Soybean	nucleus	45.44	54.32
PGSC0003DMT400021189	Potato	nucleus	44.68	50.21
Solyc08g063040.2.1	Tomato	nucleus	44.11	49.68
VIT_09s0002g02300.t01	Wine grape	nucleus	46.2	45.68
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	37.26	44.24
VIT_12s0028g03030.t01	Wine grape	nucleus	35.55	43.79
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	37.64	39.92
VIT_08s0040g02100.t01	Wine grape	nucleus	37.26	39.84
VIT_04s0023g01430.t01	Wine grape	nucleus	37.64	39.13
VIT_09s0054g01820.t01	Wine grape	nucleus	29.09	38.83
VIT_06s0004g03070.t01	Wine grape	nucleus	35.93	37.88
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	37.64	37.29
VIT_01s0010g02100.t01	Wine grape	nucleus	39.54	36.36
VIT_07s0104g01620.t01	Wine grape	nucleus	37.45	32.94
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	40.68	32.38
VIT_01s0011g06400.t01	Wine grape	nucleus	25.1	31.06
VIT_17s0000g01870.t01	Wine grape	nucleus	23.38	27.03

Protein Annotations

EntrezGene:100257789	wikigene:100257789	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB46564	ProteinID:CCB46564.1
UniProt:F6H3N1	EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013087	EntrezGene:LOC100257789	wikigene:LOC100257789	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR10593	PANTHER:PTHR10593:SF25	SMART:SM00355	SUPFAM:SSF57667	TIGR:TC56870	UniParc:UPI0001982E95
ArrayExpress:VIT_04s0008g01160	EnsemblPlantsGene:VIT_04s0008g01160	EnsemblPlants:VIT_04s0008g01160.t01	unigene:Vvi.18824	RefSeq:XP_002278933	RefSeq:XP_002278933.2
RefSeq:XP_010648346.1	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:954075..956913

Molecular Weight (calculated)

56987.0 Da

IEP (calculated)

8.881

GRAVY (calculated)

-0.585

Length

526 amino acids

Sequence
(BLAST)

001: MLKGLMVDEN MSNLTSASGE ASASSGTRNE TSNMYPQQSF VSANQAPAAA KKKRSLPGNP DPNAEVVALS PKTLQATNRF ICEICNKGFQ RDQNLQLHRR
101: GHNLPWKLKQ RTNKEVRKKV YVCPEPTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRRDSFITH
201: RAFCDALAEE SARAITGNPL LSSQPGSSSS HLNLQPQLHS HGLQAVLSLK REQEQHHSFN LKPDIPPWLA CPPVLEAGPG PPSIDLSSSL FSASLDHPLI
301: YHENPNPNST LPSFHHTASP HMSATALLQQ AAQMGVTMSK PSPSPPMLRP HQAHMSAANA GFSSTAVATS TAGSDLGLSS RDEMASGFIH GLASFGSKAA
401: VTSGFMEHVA TGAGAGAAAP SLFHDMMSSL SSASGFGGPS FEEAFNGMLN PKRENNLQEI TKTAMTKSHF SRSDHEGGGG NDGLTRDFLG LRAFSHRDFL
501: NIPGLDQMNS ASPYEQQNQN QTPWQG

Best Arabidopsis Sequence Match ( AT1G55110.2 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.