Factsheet for VIT_01s0011g06400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005060.2.1	Tomato	nucleus	56.71	71.09
CDX96046	Canola	nucleus	37.88	69.1
KRH58582	Soybean	nucleus	70.35	67.95
KRH42485	Soybean	nucleus	69.65	65.49
VIT_17s0000g01870.t01	Wine grape	nucleus	68.71	64.18
Bra026624.1-P	Field mustard	nucleus	63.29	61.42
CDY09400	Canola	nucleus	62.82	60.96
GSMUA_Achr7P18610_001	Banana	nucleus	53.65	60.32
AT2G01940.3	Thale cress	nucleus	63.29	60.31
CDY60366	Canola	nucleus	54.35	60.31
Bra017432.1-P	Field mustard	nucleus	62.35	60.23
CDY15800	Canola	nucleus	62.59	60.18
Bra024841.1-P	Field mustard	nucleus	62.82	60.14
CDY17620	Canola	nucleus	62.82	60.14
Bra024771.1-P	Field mustard	nucleus	54.12	60.05
CDX84974	Canola	nucleus	54.12	60.05
CDY04204	Canola	nucleus	50.59	59.89
AT1G25250.3	Thale cress	nucleus	53.65	59.22
CDY63960	Canola	nucleus	62.82	59.2
CDY60095	Canola	nucleus	61.41	59.05
CDY04102	Canola	nucleus	62.35	59.02
CDY36123	Canola	nucleus	52.47	58.99
Bra010981.1-P	Field mustard	nucleus	52.47	58.99
GSMUA_Achr5P23130_001	Banana	nucleus	52.71	58.95
CDY51986	Canola	nucleus	52.24	58.73
CDY04203	Canola	plastid	52.24	57.66
CDY07400	Canola	nucleus	55.53	57.14
Bra004050.1-P	Field mustard	nucleus	55.53	57.14
AT1G68130.1	Thale cress	nucleus	56.24	57.04
Bra004283.1-P	Field mustard	nucleus	55.29	57.04
GSMUA_Achr6P02490_001	Banana	nucleus	49.18	56.49
GSMUA_Achr3P20220_001	Banana	nucleus	55.06	55.19
GSMUA_Achr10P...	Banana	nucleus	49.65	55.09
GSMUA_Achr10P...	Banana	nucleus	48.47	51.63
Zm00001d005871_P002	Maize	nucleus	53.18	51.25
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	45.41	50.39
TraesCS5A01G233700.1	Wheat	nucleus	55.76	48.27
TraesCS5D01G240600.1	Wheat	nucleus	55.53	48.07
TraesCS5B01G232200.1	Wheat	nucleus	55.53	47.97
Zm00001d020683_P001	Maize	nucleus	55.06	47.08
TraesCS4B01G230800.1	Wheat	nucleus, plastid	44.71	46.91
EER96827	Sorghum	nucleus	54.82	46.69
TraesCS4D01G232000.1	Wheat	nucleus, plastid	44.94	46.14
Os03t0237250-01	Rice	plastid	47.53	46.12
TraesCS4A01G074700.1	Wheat	nucleus, plastid	44.71	45.78
Os08t0467100-01	Rice	nucleus	57.18	45.59
Zm00001d031759_P001	Maize	nucleus	55.53	45.56
HORVU4Hr1G064740.2	Barley	nucleus, plastid	45.41	45.41
Zm00001d047976_P001	Maize	nucleus, plastid	47.06	44.64
EES13982	Sorghum	nucleus	56.0	44.4
Zm00001d028361_P001	Maize	nucleus, plastid	46.35	43.58
KXG39813	Sorghum	nucleus, plastid	47.06	43.57
VIT_12s0028g03030.t01	Wine grape	nucleus	29.41	29.27
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	29.65	28.44
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	32.47	27.82
VIT_09s0054g01820.t01	Wine grape	nucleus	25.18	27.16
VIT_04s0023g01430.t01	Wine grape	nucleus	32.0	26.88
VIT_08s0040g02100.t01	Wine grape	nucleus	29.41	25.41
VIT_09s0002g02300.t01	Wine grape	nucleus	31.76	25.38
VIT_04s0008g01160.t01	Wine grape	nucleus	31.06	25.1
VIT_06s0004g03070.t01	Wine grape	nucleus	28.47	24.25
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	29.65	23.73
VIT_01s0010g02100.t01	Wine grape	nucleus	30.82	22.9
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	31.29	20.12
VIT_07s0104g01620.t01	Wine grape	nucleus	28.0	19.9

Protein Annotations

EntrezGene:100262958	wikigene:100262958	MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A5ADE6	EMBL:AM423719
ProteinID:CAN60092	ProteinID:CAN60092.1	ProteinID:CCB50752	ProteinID:CCB50752.1	ncoils:Coil	EMBL:FN595752
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	EntrezGene:LOC100262958	wikigene:LOC100262958
PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF35	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000151E7FD	ArrayExpress:VIT_01s0011g06400	EnsemblPlantsGene:VIT_01s0011g06400	EnsemblPlants:VIT_01s0011g06400.t01	unigene:Vvi.20132
RefSeq:XP_002285189	RefSeq:XP_002285189.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:6214722..6217246

Molecular Weight (calculated)

47128.6 Da

IEP (calculated)

8.407

GRAVY (calculated)

-0.697

Length

425 amino acids

Sequence
(BLAST)

001: MLENTAAAST APSSSSDAFT SLENGVCNKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC EICNQGFQRD QNLQMHRRRH KVPWKLLKRE TQEVKKRVFV
101: CPEPSCLHHD PLHALGDLVG IKKHFRRKHS NHKQWVCEKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACAVRQVRP ELQTLQPACS
201: SRTASSTSPS SDNNFSRVQL PGLTLPKPAE TVFLCLERNN PSPSDLQHNL ELRLLPSPNT YSSRNSDENH ATHLKLSIGS CNSGEMNEPR CASGDASRSS
301: PREMNTAEPA LAASRLKELA SEQLKLAMAE KASAEEARRE AKRQIELAEL EFANARRIRQ QAQAELEKAQ ILKEQAIKKV SSTILQITCH ACKHQFQATA
401: AGAPSDETSL AMSYMSSALT EGEGE

Best Arabidopsis Sequence Match ( AT2G01940.3 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGFFSSFRV ESFIEHQDNC
201: SARRVHREPP RPPQTAVTVP ACSSRTASTV STPSSETNYG GTVAVTTPQP LEGRPIHQRI SSSILTNSSN NLNLELQLLP LSSNQNPNQE NQQQKVKEPS
301: HHHNHNHDTT NLNLSIAPSS SYQHYNNFDR IKEIMASEQI MKIAMKEKAY AEEAKREAKR QREIAENEFA NAKKIRQKAQ AELERAKFLK EQSMKKISST
401: IMQVTCQTCK GQFQAVAVPA ATADETSLVV SYMSSANTDG ELENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.