Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 71.09 | 56.71 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 59.59 | 53.44 |
| KRH58582 | Soybean | nucleus | 68.73 | 52.95 |
| Solyc06g072360.2.1 | Tomato | nucleus | 61.06 | 52.81 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 58.11 | 51.84 |
| KRH42485 | Soybean | nucleus | 67.85 | 50.88 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 54.57 | 50.0 |
| GSMUA_Achr10P... | Banana | nucleus | 56.34 | 49.87 |
| Solyc03g098070.2.1 | Tomato | nucleus | 51.62 | 48.08 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 59.29 | 47.41 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 51.33 | 45.43 |
| GSMUA_Achr10P... | Banana | nucleus | 53.39 | 45.36 |
| Solyc05g054030.2.1 | Tomato | nucleus | 49.85 | 44.36 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 52.21 | 43.7 |
| Zm00001d005871_P002 | Maize | nucleus | 56.34 | 43.31 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 52.21 | 42.75 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 52.21 | 42.65 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 52.51 | 41.88 |
| Os03t0237250-01 | Rice | plastid | 52.8 | 40.87 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 53.39 | 40.4 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 58.11 | 40.12 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 58.11 | 40.04 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 57.82 | 39.92 |
| EER96827 | Sorghum | nucleus | 58.7 | 39.88 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 53.1 | 39.82 |
| KXG39813 | Sorghum | nucleus, plastid | 53.69 | 39.65 |
| Zm00001d020683_P001 | Maize | nucleus | 58.11 | 39.64 |
| Zm00001d031759_P001 | Maize | nucleus | 58.41 | 38.22 |
| Os08t0467100-01 | Rice | nucleus | 58.11 | 36.96 |
| EES13982 | Sorghum | nucleus | 57.52 | 36.38 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 33.33 | 24.62 |
| Solyc01g099340.2.1 | Tomato | nucleus | 30.68 | 24.53 |
| Solyc08g063040.2.1 | Tomato | nucleus | 32.74 | 23.77 |
| Solyc09g065670.2.1 | Tomato | nucleus | 32.15 | 23.19 |
| Solyc04g080130.2.1 | Tomato | nucleus | 33.92 | 22.95 |
| Solyc11g069240.1.1 | Tomato | nucleus | 30.38 | 22.94 |
| Solyc10g084180.1.1 | Tomato | nucleus | 32.74 | 22.52 |
| Solyc06g062670.2.1 | Tomato | nucleus | 33.33 | 22.47 |
| Solyc03g121660.2.1 | Tomato | nucleus | 35.4 | 22.14 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 33.33 | 21.73 |
| Solyc07g053570.2.1 | Tomato | nucleus | 32.15 | 21.71 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 33.33 | 21.4 |
| Solyc04g008500.2.1 | Tomato | nucleus | 31.27 | 20.5 |
| Solyc02g062940.2.1 | Tomato | nucleus | 34.51 | 17.84 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR013087 | UniProt:K4AS73 | PFAM:PF00096 | PFAM:PF13912 | ScanProsite:PS00028 |
| ScanProsite:PS01359 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF35 | SMART:SM00355 | SUPFAM:SSF57667 |
| EnsemblPlantsGene:Solyc01g005060.2 | EnsemblPlants:Solyc01g005060.2.1 | UniParc:UPI00027618D2 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:58680..61050
Molecular Weight (calculated)
38604.7 Da
IEP (calculated)
8.544
GRAVY (calculated)
-0.824
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDNSSSSEA LINSGDSNRR KRRPAGTPDP DAEVVSLSPK TLLESDRYIC DICDQGFQRD QNLQMHRRRH KVPWKLVKRE IEVKKRVFVC PEPSCLHHDP
101: CHALGDLVGI KKHFRRKHSD NKQWICDKCG KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD SCTIRRIRPR LQPITAACSS SDTNLPKLAI
201: MPLPKNSTNL ELGLKSSSHH ENTIEEAHLK LSIGSSSPNH EVLNLVMADK AYAEEARRNA KREMEYAERE FENAKRIRQQ AQAEIERAKQ LKEEAINRIS
301: SSILEITCHA CKNKFQTIDN NVDSSPPMSY MSSDGEREQ
101: CHALGDLVGI KKHFRRKHSD NKQWICDKCG KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD SCTIRRIRPR LQPITAACSS SDTNLPKLAI
201: MPLPKNSTNL ELGLKSSSHH ENTIEEAHLK LSIGSSSPNH EVLNLVMADK AYAEEARRNA KREMEYAERE FENAKRIRQQ AQAEIERAKQ LKEEAINRIS
301: SSILEITCHA CKNKFQTIDN NVDSSPPMSY MSSDGEREQ
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.