Factsheet for Zm00001d028361_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39813	Sorghum	nucleus, plastid	82.96	81.7
Zm00001d047976_P001	Maize	nucleus, plastid	80.53	81.25
TraesCS4D01G232000.1	Wheat	nucleus, plastid	70.58	77.05
Os03t0237250-01	Rice	plastid	74.11	76.48
TraesCS4A01G074700.1	Wheat	nucleus, plastid	69.91	76.14
TraesCS4B01G230800.1	Wheat	nucleus, plastid	68.14	76.05
HORVU4Hr1G064740.2	Barley	nucleus, plastid	71.24	75.76
CDX96046	Canola	nucleus	30.31	58.8
Solyc01g005060.2.1	Tomato	nucleus	39.82	53.1
KRH60588	Soybean	nucleus	43.58	49.25
Solyc06g072360.2.1	Tomato	nucleus	42.48	48.98
KRH41885	Soybean	nucleus	40.93	48.68
CDY04204	Canola	nucleus	37.83	47.63
Zm00001d005871_P002	Maize	nucleus	46.02	47.17
CDX84974	Canola	nucleus	39.6	46.74
PGSC0003DMT400079735	Potato	nucleus, plastid	45.13	46.68
CDY60366	Canola	nucleus	39.38	46.48
PGSC0003DMT400069306	Potato	nucleus	42.26	46.47
VIT_01s0011g06400.t01	Wine grape	nucleus	43.58	46.35
CDY36123	Canola	nucleus	38.72	46.3
Bra010981.1-P	Field mustard	nucleus	38.72	46.3
Bra024771.1-P	Field mustard	nucleus	39.16	46.21
CDY51986	Canola	nucleus	38.5	46.03
AT1G25250.3	Thale cress	nucleus	39.16	45.97
AT1G68130.1	Thale cress	nucleus	41.59	44.87
CDY04203	Canola	plastid	38.05	44.68
Bra004283.1-P	Field mustard	nucleus	40.71	44.66
Bra004050.1-P	Field mustard	nucleus	40.49	44.31
CDY07400	Canola	nucleus	40.49	44.31
Solyc03g098070.2.1	Tomato	nucleus	35.4	43.96
KRH58582	Soybean	nucleus	42.26	43.41
Bra026624.1-P	Field mustard	nucleus	42.04	43.38
VIT_17s0000g01870.t01	Wine grape	nucleus	43.58	43.3
CDY09400	Canola	nucleus	41.59	42.92
CDY15800	Canola	nucleus	41.59	42.53
Zm00001d020683_P001	Maize	nucleus	46.68	42.45
Bra024841.1-P	Field mustard	nucleus	41.37	42.12
CDY17620	Canola	nucleus	41.37	42.12
KRH42485	Soybean	nucleus	42.04	42.04
KRH38986	Soybean	nucleus	44.03	41.98
AT2G01940.3	Thale cress	nucleus	41.15	41.7
Zm00001d031759_P001	Maize	nucleus	47.79	41.7
Bra017432.1-P	Field mustard	nucleus	40.49	41.59
CDY63960	Canola	nucleus	41.37	41.46
KRH48724	Soybean	nucleus	43.81	40.99
CDY04102	Canola	nucleus	40.71	40.98
CDY60095	Canola	nucleus	40.04	40.95
Solyc05g054030.2.1	Tomato	nucleus	34.29	40.68
Zm00001d039254_P001	Maize	nucleus	24.34	31.07
Zm00001d009030_P002	Maize	nucleus	27.21	27.52
Zm00001d008842_P001	Maize	nucleus	28.1	27.19
Zm00001d032922_P001	Maize	nucleus	25.0	25.92
Zm00001d011223_P002	Maize	nucleus	26.77	25.85
Zm00001d044261_P001	Maize	nucleus	26.99	25.42
Zm00001d039467_P001	Maize	nucleus	27.88	25.35
Zm00001d028139_P001	Maize	nucleus	28.54	23.93
Zm00001d042202_P001	Maize	nucleus	27.65	23.81
Zm00001d021403_P001	Maize	nucleus	23.89	22.31
Zm00001d016632_P001	Maize	nucleus	24.11	21.46
Zm00001d017560_P001	Maize	nucleus	26.99	20.96
Zm00001d026113_P006	Maize	nucleus	27.21	20.53
Zm00001d006319_P001	Maize	nucleus	24.78	20.04
Zm00001d002654_P003	Maize	nucleus	26.77	19.12
Zm00001d031992_P001	Maize	nucleus	25.22	18.84
Zm00001d006682_P001	Maize	nucleus	28.32	17.25
Zm00001d021932_P001	Maize	nucleus	28.1	15.58

Protein Annotations

EnsemblPlants:Zm00001d028361_P001	EnsemblPlants:Zm00001d028361_T001	EnsemblPlantsGene:Zm00001d028361	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593
PANTHER:PTHR10593:SF30	PFscan:PS50157	ProteinID:ONL95787.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI0001B36E54	UniProt:A0A1D6JVG3	MapMan:15.5.15	:	:

Description

C2H2-transcription factor 225Protein SHOOT GRAVITROPISM 5

Coordinates

chr1:-:32068552..32072460

Molecular Weight (calculated)

47241.0 Da

IEP (calculated)

9.858

GRAVY (calculated)

-0.444

Length

452 amino acids

Sequence
(BLAST)

001: MALLVKSHHQ MLVSSSTSSS SPSASQQRQP PPPPPSSSCL TEQQPSPAKR KRRPPGTPDP DAEVVALSPR TLLESDRYVC EICGQGFQRE QNLQMHRRRH
101: KVPWRLVKRA PPPPAAAAGG GGGAADANNS SGTGGGAGGG APRKRVFVCP EPSCLHHDPA HALGDLVGIK KHFRRKHGGR RQWVCARCAK GYAVQSDYKA
201: HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CNSSRMRGEA VVVAVPVPVP PPSALPVIRP AVPRHPPTVA VAPPPPPELQ LLPASAAASA PRTSSATTTA
301: SPSTTTTASH HQAEPHAATT TKLQLSIGPI VTAAAAAAVD CGEDESEAEE LRRAVEEKAA ADAARERARG EAAAAERALD EARRARQRAR ADLEKACALR
401: DHAARLLGQV TCHACRHRSL AVAVVRGAAE GHAAGPAVAC DSIRGGGLGA GI

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.