Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36123 | Canola | nucleus | 82.6 | 84.13 |
| Bra010981.1-P | Field mustard | nucleus | 82.6 | 84.13 |
| CDY51986 | Canola | nucleus | 81.82 | 83.33 |
| CDY60366 | Canola | nucleus | 79.74 | 80.16 |
| Bra024771.1-P | Field mustard | nucleus | 79.74 | 80.16 |
| CDX84974 | Canola | nucleus | 79.22 | 79.63 |
| AT1G68130.1 | Thale cress | nucleus | 62.6 | 57.52 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 59.22 | 53.65 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 50.91 | 52.97 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 51.95 | 52.91 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 52.21 | 52.89 |
| KRH58582 | Soybean | nucleus | 60.0 | 52.5 |
| KRH42485 | Soybean | nucleus | 60.0 | 51.11 |
| GSMUA_Achr10P... | Banana | nucleus | 50.13 | 50.39 |
| AT2G01940.3 | Thale cress | nucleus | 57.14 | 49.33 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 53.25 | 48.35 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 46.75 | 47.0 |
| GSMUA_Achr10P... | Banana | nucleus | 45.19 | 43.61 |
| Zm00001d005871_P002 | Maize | nucleus | 49.35 | 43.08 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 44.94 | 42.72 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 54.03 | 42.28 |
| Solyc05g054030.2.1 | Tomato | nucleus | 41.82 | 42.26 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 53.77 | 42.16 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 53.77 | 42.16 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 45.19 | 42.03 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 45.19 | 41.93 |
| Os03t0237250-01 | Rice | plastid | 47.01 | 41.32 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 45.45 | 41.18 |
| Zm00001d020683_P001 | Maize | nucleus | 50.65 | 39.24 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 45.97 | 39.16 |
| EER96827 | Sorghum | nucleus | 50.39 | 38.88 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 45.19 | 38.84 |
| Os08t0467100-01 | Rice | nucleus | 52.99 | 38.27 |
| Zm00001d031759_P001 | Maize | nucleus | 51.43 | 38.22 |
| KXG39813 | Sorghum | nucleus, plastid | 44.68 | 37.47 |
| EES13982 | Sorghum | nucleus | 51.95 | 37.31 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 28.31 | 26.98 |
| AT3G50700.1 | Thale cress | nucleus | 30.13 | 25.66 |
| AT3G45260.1 | Thale cress | nucleus | 29.35 | 25.34 |
| AT5G60470.2 | Thale cress | nucleus | 30.13 | 25.27 |
| AT5G44160.1 | Thale cress | nucleus | 29.87 | 24.68 |
| AT1G55110.2 | Thale cress | nucleus | 28.31 | 23.96 |
| AT5G66730.1 | Thale cress | nucleus | 30.65 | 23.6 |
| AT5G03150.1 | Thale cress | nucleus | 29.09 | 22.27 |
| AT1G03840.1 | Thale cress | nucleus | 29.09 | 22.13 |
| AT1G14580.3 | Thale cress | nucleus | 26.49 | 21.21 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 28.31 | 21.12 |
| AT3G13810.2 | Thale cress | nucleus | 28.05 | 21.01 |
| AT2G02070.2 | Thale cress | nucleus | 27.53 | 17.61 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:839108 | UniProt:A0A178WG74 | EMBL:AB493476 | ProteinID:ANM59434.1 |
| ArrayExpress:AT1G25250 | EnsemblPlantsGene:AT1G25250 | RefSeq:AT1G25250 | TAIR:AT1G25250 | RefSeq:AT1G25250-TAIR-G | EnsemblPlants:AT1G25250.3 |
| Unigene:At.51762 | Symbol:AtIDD16 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | RefSeq:NP_001321791.1 | ProteinID:OAP16463.1 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF43 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000198E92A | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
AtIDD16IDD16 [Source:UniProtKB/TrEMBL;Acc:A0A178WG74]
Coordinates
chr1:+:8849034..8851790
Molecular Weight (calculated)
43949.0 Da
IEP (calculated)
8.754
GRAVY (calculated)
-0.872
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHYEQNNNL QNLPSSSSND LLLGINGADA THKRKRRPAG TPDPDAEVVS LSPRTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRDKKDEEV
101: RKRVYVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSVHKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE SFIEHQDTCT IRQPQPTNHR
201: HLQQHTMGLD APSRTTSTAS FGPLLHGLPL LRPPRPSNQH SPAFAYPFNA SSAPFESLEL QLSIGMARTS AQARHNEKRE TSLTKERANE EARKAEETRQ
301: EAKRQIEMAE KDFEKAKRIR EEAKTELEKA HVVREEAIKR INATMMEITC HSCKQLFQLP VTADESTSSL VMSYVSSATT EGECE
101: RKRVYVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSVHKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE SFIEHQDTCT IRQPQPTNHR
201: HLQQHTMGLD APSRTTSTAS FGPLLHGLPL LRPPRPSNQH SPAFAYPFNA SSAPFESLEL QLSIGMARTS AQARHNEKRE TSLTKERANE EARKAEETRQ
301: EAKRQIEMAE KDFEKAKRIR EEAKTELEKA HVVREEAIKR INATMMEITC HSCKQLFQLP VTADESTSSL VMSYVSSATT EGECE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.