Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G45260.1 | Thale cress | nucleus | 57.3 | 58.97 |
| AT3G50700.1 | Thale cress | nucleus | 38.13 | 38.72 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 33.99 | 38.61 |
| AT1G55110.2 | Thale cress | nucleus | 35.51 | 35.82 |
| AT5G44160.1 | Thale cress | nucleus | 35.51 | 34.98 |
| AT1G03840.1 | Thale cress | nucleus | 37.69 | 34.19 |
| AT5G66730.1 | Thale cress | nucleus | 36.82 | 33.8 |
| AT5G03150.1 | Thale cress | nucleus | 35.51 | 32.41 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 35.73 | 31.78 |
| AT1G14580.3 | Thale cress | nucleus | 33.12 | 31.6 |
| AT1G25250.3 | Thale cress | nucleus | 25.27 | 30.13 |
| AT3G13810.2 | Thale cress | nucleus | 33.55 | 29.96 |
| AT2G02070.2 | Thale cress | nucleus | 36.38 | 27.74 |
| AT2G01940.3 | Thale cress | nucleus | 25.49 | 26.23 |
| AT1G68130.1 | Thale cress | nucleus | 23.09 | 25.3 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:836168 | UniProt:A0A1P8BF95 | ProteinID:ANM70269.1 | ProteinID:ANM70270.1 |
| ArrayExpress:AT5G60470 | EnsemblPlantsGene:AT5G60470 | RefSeq:AT5G60470 | TAIR:AT5G60470 | RefSeq:AT5G60470-TAIR-G | EnsemblPlants:AT5G60470.2 |
| Unigene:At.55643 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR013087 |
| RefSeq:NP_001331894.1 | RefSeq:NP_001331895.1 | PFAM:PF12171 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF99 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00084965FF | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
C2H2 and C2HC zinc fingers superfamily protein [Source:TAIR;Acc:AT5G60470]
Coordinates
chr5:+:24320411..24322939
Molecular Weight (calculated)
51587.6 Da
IEP (calculated)
9.493
GRAVY (calculated)
-0.778
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQDMMIPHN HDRLSFSSFV HDQEHITPNP YPNSQPAAST KTPKKKRNLP GNPDPNAEVI SLSPKSLMAT NRFFCEICNK GFQREQNLQL HKRGHNLPWK
101: LKQKTNKNQV KKKVYICPEK SCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VISDWKAHNK ICGSREFRCD CGTLFSRKDS FISHRSFCDV
201: LAEESSKFFS VPSPLAANST IATVTDTNNP ILIQSQLDQS STGTADLNVN NNHTTLFGQK FTNSNPTQQQ PNALALSSPP SPRSTSDSVH NLWKLQEEEC
301: AHQWLLNEYM NNNKNIFHKG IFKNQEDEIK KGNIYSGSNP TDGNIASLFS YNQEAVNMAS FSATTLLQKV AQTGTPSSSE TSTTMFGQMT SSIFNNTMLN
401: SYCLTAKNNE EELTRDFLGV GSSEDQQRLH RHRFPSSVPL TANHDIPKLA ATIVGRKQP
101: LKQKTNKNQV KKKVYICPEK SCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VISDWKAHNK ICGSREFRCD CGTLFSRKDS FISHRSFCDV
201: LAEESSKFFS VPSPLAANST IATVTDTNNP ILIQSQLDQS STGTADLNVN NNHTTLFGQK FTNSNPTQQQ PNALALSSPP SPRSTSDSVH NLWKLQEEEC
301: AHQWLLNEYM NNNKNIFHKG IFKNQEDEIK KGNIYSGSNP TDGNIASLFS YNQEAVNMAS FSATTLLQKV AQTGTPSSSE TSTTMFGQMT SSIFNNTMLN
401: SYCLTAKNNE EELTRDFLGV GSSEDQQRLH RHRFPSSVPL TANHDIPKLA ATIVGRKQP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.