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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra033840.1-P Field mustard nucleus 81.39 80.13
CDY53836 Canola nucleus 80.04 78.81
CDX86010 Canola nucleus 78.92 78.57
AT5G60470.2 Thale cress nucleus 58.97 57.3
AT4G02670.2 Thale cress nucleus, plastid 37.67 41.58
AT3G50700.1 Thale cress nucleus 41.48 40.93
Bra038293.1-P Field mustard nucleus 79.6 40.07
AT1G55110.2 Thale cress nucleus 39.69 38.9
AT5G44160.1 Thale cress nucleus 39.46 37.77
AT5G66730.1 Thale cress nucleus 41.03 36.6
AT1G03840.1 Thale cress nucleus 41.03 36.17
AT5G03150.1 Thale cress nucleus 40.36 35.79
AT2G02080.3 Thale cress nucleus, plastid 38.79 33.53
AT1G14580.3 Thale cress nucleus 35.2 32.64
AT3G13810.2 Thale cress nucleus 37.44 32.49
AT2G02070.2 Thale cress nucleus 41.26 30.56
AT1G25250.3 Thale cress nucleus 25.34 29.35
AT2G01940.3 Thale cress nucleus 27.8 27.8
AT1G68130.1 Thale cress nucleus 24.66 26.25
Protein Annotations
MapMan:15.5.15Gene3D:3.30.160.60EntrezGene:823664ProteinID:AEE78015.1EMBL:AF428302EMBL:AJ621493
ProteinID:ANM65354.1ArrayExpress:AT3G45260EnsemblPlantsGene:AT3G45260RefSeq:AT3G45260TAIR:AT3G45260RefSeq:AT3G45260-TAIR-G
EnsemblPlants:AT3G45260.1TAIR:AT3G45260.1EMBL:AY143936Unigene:At.22283ProteinID:CAB72475.1GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0046872InterPro:IPR013087
InterPro:JKD-likeRefSeq:NP_001327332.1RefSeq:NP_566877.1PFAM:PF12171PO:PO:0000013PO:PO:0000037
PO:PO:0000293PO:PO:0001054PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009025PO:PO:0009029PO:PO:0009031PO:PO:0009047PO:PO:0020030
PO:PO:0020038PO:PO:0020137PO:PO:0025022ScanProsite:PS00028PFscan:PS50157PANTHER:PTHR10593
PANTHER:PTHR10593:SF42UniProt:Q944L3SMART:SM00355SUPFAM:SSF57667UniParc:UPI00000AC0B9InterPro:Znf_C2H2_jaz
InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typeSEG:seg:::
Description
IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
Coordinates
chr3:-:16596358..16598811
Molecular Weight (calculated)
49943.4 Da
IEP (calculated)
9.855
GRAVY (calculated)
-0.898
Length
446 amino acids
Sequence
(BLAST)
001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.