Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53836 | Canola | nucleus | 94.64 | 93.6 |
| CDY04118 | Canola | nucleus | 22.1 | 83.19 |
| CDY09390 | Canola | nucleus | 21.65 | 81.51 |
| AT3G45260.1 | Thale cress | nucleus | 78.57 | 78.92 |
| CDY14910 | Canola | nucleus | 22.32 | 75.19 |
| CDY72283 | Canola | nucleus | 28.12 | 66.67 |
| CDY37489 | Canola | nucleus | 26.79 | 65.22 |
| CDY53540 | Canola | nucleus | 26.79 | 61.86 |
| CDY04117 | Canola | nucleus | 28.12 | 58.88 |
| CDY70142 | Canola | nucleus | 22.1 | 54.4 |
| CDX96046 | Canola | nucleus | 22.77 | 43.78 |
| CDX97281 | Canola | nucleus, plastid | 36.38 | 42.34 |
| CDY24490 | Canola | nucleus | 39.51 | 40.69 |
| CDX77936 | Canola | nucleus | 39.51 | 40.6 |
| CDX91304 | Canola | nucleus, plastid | 36.38 | 40.35 |
| CDX89862 | Canola | nucleus | 40.18 | 37.5 |
| CDY18188 | Canola | nucleus | 39.96 | 37.37 |
| CDX75732 | Canola | nucleus | 36.83 | 37.25 |
| CDY22307 | Canola | nucleus | 38.39 | 37.07 |
| CDY67009 | Canola | nucleus | 39.29 | 36.97 |
| CDX82515 | Canola | nucleus | 36.38 | 36.96 |
| CDY45271 | Canola | nucleus | 34.15 | 36.78 |
| CDX94759 | Canola | nucleus | 37.95 | 36.64 |
| CDY32514 | Canola | nucleus | 39.73 | 36.33 |
| CDY59418 | Canola | nucleus | 33.48 | 36.32 |
| CDX81372 | Canola | nucleus | 39.51 | 36.2 |
| CDY57128 | Canola | nucleus | 39.29 | 35.77 |
| CDY44344 | Canola | nucleus | 39.51 | 35.4 |
| CDY11241 | Canola | nucleus | 39.51 | 35.19 |
| CDY55238 | Canola | nucleus | 38.17 | 35.19 |
| CDY45270 | Canola | nucleus | 35.27 | 35.11 |
| CDX97521 | Canola | nucleus | 37.95 | 35.05 |
| CDY51742 | Canola | nucleus | 37.72 | 34.92 |
| CDY10404 | Canola | nucleus | 39.51 | 34.91 |
| CDX80854 | Canola | nucleus | 39.06 | 34.65 |
| CDY17440 | Canola | nucleus | 36.61 | 34.31 |
| CDX70328 | Canola | nucleus | 38.84 | 33.85 |
| CDX81653 | Canola | nucleus | 35.04 | 33.62 |
| CDY03081 | Canola | nucleus | 39.29 | 33.59 |
| CDY17615 | Canola | nucleus | 38.84 | 33.02 |
| CDY15814 | Canola | nucleus | 34.82 | 32.98 |
| CDY17614 | Canola | nucleus, plastid | 37.5 | 32.75 |
| CDY03080 | Canola | nucleus, plastid | 37.5 | 32.56 |
| CDY15811 | Canola | nucleus | 39.73 | 31.34 |
| CDY09391 | Canola | nucleus | 39.51 | 31.22 |
| CDY12268 | Canola | nucleus | 29.02 | 29.15 |
| CDY51986 | Canola | nucleus | 24.55 | 29.1 |
| CDY36123 | Canola | nucleus | 24.55 | 29.1 |
| CDX84974 | Canola | nucleus | 24.78 | 28.98 |
| CDY60366 | Canola | nucleus | 24.78 | 28.98 |
| CDY04204 | Canola | nucleus | 22.99 | 28.69 |
| CDY67587 | Canola | cytosol, nucleus | 14.06 | 28.0 |
| CDY09400 | Canola | nucleus | 26.56 | 27.17 |
| CDY68983 | Canola | nucleus | 23.66 | 27.11 |
| CDY04203 | Canola | plastid | 23.21 | 27.01 |
| CDY15800 | Canola | nucleus | 26.56 | 26.92 |
| CDY17620 | Canola | nucleus | 26.56 | 26.8 |
| CDY07400 | Canola | nucleus | 24.55 | 26.63 |
| CDY60095 | Canola | nucleus | 26.12 | 26.47 |
| CDY70938 | Canola | cytosol, nucleus | 16.07 | 26.37 |
| CDY04102 | Canola | nucleus | 26.34 | 26.28 |
| CDY63960 | Canola | nucleus | 26.34 | 26.16 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078D9S8 | EnsemblPlants:CDX86010 | ProteinID:CDX86010 | ProteinID:CDX86010.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00143932001 | InterPro:IPR013087 | InterPro:JKD-like |
| PFAM:PF12171 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF42 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EEFCBD | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
BnaC03g55250D
Coordinates
chrLK031844:-:139326..141384
Molecular Weight (calculated)
50071.0 Da
IEP (calculated)
9.714
GRAVY (calculated)
-0.780
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIPDDPHLL SFPSYVLHQE HITPNPNPNP NPTASKSNKR KRNLPGNPGM YNPDAEVIAL SPNSLMTTNR FICEICNKGF KRDQNLQLHR RGHNLPWKLK
101: QRTDKEQVKK KVYICPENTC VHHDPGRALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVV SDWKAHSKIC GTREYRCDCG TLFSRKDSFI THRAFCDALA
201: EESARFASLP PAAAAYLNNS SDAEVNLGNI KPNHQQRLLD CTSSQLDRHD FNVNRNNING FTGQSSTNQL PLAANVFASS SSPSPHSASA LLQNLWQLQG
301: QSYQQLLLNK NNNNIIQSGM PNNQEDHDTI KRELVINGSL FSSEARTSYN QNGGQEIASM SATALLQMAA QMGSKRSSSS SNNGMAFGLM TSSIFNNKEM
401: ENKIKTKEVD ERGFTRDFLG EGSQNRPRPI LMVNHNLPTT TTAHQPPT
101: QRTDKEQVKK KVYICPENTC VHHDPGRALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVV SDWKAHSKIC GTREYRCDCG TLFSRKDSFI THRAFCDALA
201: EESARFASLP PAAAAYLNNS SDAEVNLGNI KPNHQQRLLD CTSSQLDRHD FNVNRNNING FTGQSSTNQL PLAANVFASS SSPSPHSASA LLQNLWQLQG
301: QSYQQLLLNK NNNNIIQSGM PNNQEDHDTI KRELVINGSL FSSEARTSYN QNGGQEIASM SATALLQMAA QMGSKRSSSS SNNGMAFGLM TSSIFNNKEM
401: ENKIKTKEVD ERGFTRDFLG EGSQNRPRPI LMVNHNLPTT TTAHQPPT
001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ
Arabidopsis Description
IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.