Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009549.1-P | Field mustard | nucleus | 96.25 | 94.57 |
| CDX70328 | Canola | nucleus | 94.48 | 93.19 |
| AT5G03150.1 | Thale cress | nucleus | 87.77 | 88.47 |
| CDY11241 | Canola | nucleus | 87.57 | 88.27 |
| CDX80854 | Canola | nucleus | 87.57 | 87.92 |
| CDY44344 | Canola | nucleus | 86.39 | 87.6 |
| CDY09390 | Canola | nucleus | 19.33 | 82.35 |
| CDY04118 | Canola | nucleus | 19.33 | 82.35 |
| CDY14910 | Canola | nucleus | 18.34 | 69.92 |
| CDY37489 | Canola | nucleus | 25.25 | 69.57 |
| CDY72283 | Canola | nucleus | 24.85 | 66.67 |
| CDY53540 | Canola | nucleus | 24.46 | 63.92 |
| CDY04117 | Canola | nucleus | 26.04 | 61.68 |
| CDY70142 | Canola | nucleus | 20.32 | 56.59 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 53.06 | 54.67 |
| KRH67672 | Soybean | nucleus | 51.28 | 50.58 |
| KRG95964 | Soybean | nucleus | 50.69 | 50.39 |
| PGSC0003DMT400004390 | Potato | nucleus | 43.39 | 48.25 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 43.39 | 47.93 |
| CDX97281 | Canola | nucleus, plastid | 32.35 | 42.6 |
| CDX96046 | Canola | nucleus | 19.53 | 42.49 |
| CDX77936 | Canola | nucleus | 35.31 | 41.05 |
| GSMUA_Achr7P22720_001 | Banana | mitochondrion | 22.68 | 40.93 |
| CDY24490 | Canola | nucleus | 35.11 | 40.92 |
| CDX75732 | Canola | nucleus | 35.7 | 40.86 |
| CDX91304 | Canola | nucleus, plastid | 32.54 | 40.84 |
| CDY18188 | Canola | nucleus | 38.26 | 40.5 |
| CDX89862 | Canola | nucleus | 38.07 | 40.21 |
| CDY59418 | Canola | nucleus | 32.74 | 40.19 |
| CDX82515 | Canola | nucleus | 34.71 | 39.91 |
| Solyc10g084180.1.1 | Tomato | nucleus | 38.46 | 39.55 |
| CDX86010 | Canola | nucleus | 34.91 | 39.51 |
| PGSC0003DMT400027159 | Potato | nucleus | 38.26 | 39.43 |
| CDY53836 | Canola | nucleus | 35.11 | 39.29 |
| CDY67009 | Canola | nucleus | 36.49 | 38.87 |
| CDX94759 | Canola | nucleus | 35.5 | 38.79 |
| CDX97521 | Canola | nucleus | 37.08 | 38.76 |
| CDY22307 | Canola | nucleus | 35.31 | 38.58 |
| CDY32514 | Canola | nucleus | 37.28 | 38.57 |
| CDY51742 | Canola | nucleus | 36.69 | 38.43 |
| CDY55238 | Canola | nucleus | 36.69 | 38.27 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 39.05 | 37.5 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 38.86 | 37.31 |
| CDY17440 | Canola | nucleus | 34.91 | 37.03 |
| CDX81653 | Canola | nucleus | 33.92 | 36.83 |
| CDX81372 | Canola | nucleus | 35.5 | 36.81 |
| CDY57128 | Canola | nucleus | 35.7 | 36.79 |
| CDY17615 | Canola | nucleus | 38.07 | 36.62 |
| CDY03081 | Canola | nucleus | 37.48 | 36.26 |
| CDY15814 | Canola | nucleus | 33.73 | 36.15 |
| CDY17614 | Canola | nucleus, plastid | 36.29 | 35.87 |
| CDY45271 | Canola | nucleus | 29.19 | 35.58 |
| CDY03080 | Canola | nucleus, plastid | 35.9 | 35.27 |
| CDY09391 | Canola | nucleus | 38.86 | 34.74 |
| CDY15811 | Canola | nucleus | 38.66 | 34.51 |
| CDY45270 | Canola | nucleus | 29.78 | 33.56 |
| CDY70938 | Canola | cytosol, nucleus | 17.36 | 32.23 |
| CDY36123 | Canola | nucleus | 21.7 | 29.1 |
| CDY51986 | Canola | nucleus | 21.7 | 29.1 |
| CDY04204 | Canola | nucleus | 20.12 | 28.41 |
| CDX84974 | Canola | nucleus | 21.3 | 28.2 |
| CDY60366 | Canola | nucleus | 21.1 | 27.94 |
| CDY04203 | Canola | plastid | 20.51 | 27.01 |
| CDY09400 | Canola | nucleus | 23.08 | 26.71 |
| CDY07400 | Canola | nucleus | 21.5 | 26.39 |
| CDY67587 | Canola | cytosol, nucleus | 11.64 | 26.22 |
| CDY15800 | Canola | nucleus | 22.49 | 25.79 |
| CDY12268 | Canola | nucleus | 22.68 | 25.78 |
| CDY17620 | Canola | nucleus | 22.49 | 25.68 |
| CDY60095 | Canola | nucleus | 22.29 | 25.57 |
| CDY04102 | Canola | nucleus | 22.29 | 25.17 |
| CDY63960 | Canola | nucleus | 22.29 | 25.06 |
| CDY68983 | Canola | nucleus | 18.54 | 24.04 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078FBM8 | UniProt:A0A078FBM8 | EnsemblPlants:CDY10404 | ProteinID:CDY10404 |
| ProteinID:CDY10404.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00032318001 | InterPro:IPR013087 |
| InterPro:JKD-like | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF42 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EF12A4 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
BnaCnng03050DBnaCnng03050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBM8]
Coordinates
chrLK032003:-:295124..297826
Molecular Weight (calculated)
55906.5 Da
IEP (calculated)
10.092
GRAVY (calculated)
-0.761
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMIPGDPFS ISSSMGGFVH QEQHLHHLQQ HIQDINPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKFK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNSAISTTT MTTNLNFGND SHVMNNPNLP HGFVHRGVHH PDINAAISQF GLGFGNDLTG MHPQGLSEMV QMTSSGNHHL
301: FPLSSSSVLP VFSGHHHNQQ FQIPTSSTNP NFTLSSSSTS QQTSASLPSL QQQHQTPKDS SFSPLFSSSC ETKQNKPLSP MSATALLQKA AQMGSTRSNS
401: TTAPSIFAGP TMTSSSSAAS HPPPRSSSPV MIQQQLNNNF NTNVPRDTHN SVENNYRFQS NRSSTNPVQQ MGLTRDFLGV SNEHHPHQTG HRPFLPQELA
501: RFAPSSG
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKFK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNSAISTTT MTTNLNFGND SHVMNNPNLP HGFVHRGVHH PDINAAISQF GLGFGNDLTG MHPQGLSEMV QMTSSGNHHL
301: FPLSSSSVLP VFSGHHHNQQ FQIPTSSTNP NFTLSSSSTS QQTSASLPSL QQQHQTPKDS SFSPLFSSSC ETKQNKPLSP MSATALLQKA AQMGSTRSNS
401: TTAPSIFAGP TMTSSSSAAS HPPPRSSSPV MIQQQLNNNF NTNVPRDTHN SVENNYRFQS NRSSTNPVQQ MGLTRDFLGV SNEHHPHQTG HRPFLPQELA
501: RFAPSSG
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
Arabidopsis Description
JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.