Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G03150.1 | Thale cress | nucleus | 87.8 | 87.28 |
| CDX70328 | Canola | nucleus | 89.0 | 86.58 |
| CDX80854 | Canola | nucleus | 87.4 | 86.53 |
| CDY10404 | Canola | nucleus | 87.6 | 86.39 |
| CDY11241 | Canola | nucleus | 86.8 | 86.28 |
| CDY09390 | Canola | nucleus | 19.6 | 82.35 |
| CDY04118 | Canola | nucleus | 19.6 | 82.35 |
| CDY37489 | Canola | nucleus | 25.6 | 69.57 |
| CDY14910 | Canola | nucleus | 18.4 | 69.17 |
| CDY72283 | Canola | nucleus | 25.0 | 66.14 |
| CDY53540 | Canola | nucleus | 24.8 | 63.92 |
| CDY04117 | Canola | nucleus | 26.4 | 61.68 |
| CDY70142 | Canola | nucleus | 20.4 | 56.04 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 52.4 | 53.25 |
| KRH67672 | Soybean | nucleus | 51.4 | 50.0 |
| KRG95964 | Soybean | nucleus | 50.8 | 49.8 |
| PGSC0003DMT400004390 | Potato | nucleus | 42.2 | 46.27 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 42.4 | 46.19 |
| CDX96046 | Canola | nucleus | 19.8 | 42.49 |
| CDX97281 | Canola | nucleus, plastid | 32.6 | 42.34 |
| CDX75732 | Canola | nucleus | 36.2 | 40.86 |
| CDX77936 | Canola | nucleus | 35.4 | 40.6 |
| CDY24490 | Canola | nucleus | 35.2 | 40.46 |
| CDX91304 | Canola | nucleus, plastid | 32.6 | 40.35 |
| GSMUA_Achr7P22720_001 | Banana | mitochondrion | 22.6 | 40.21 |
| CDY59418 | Canola | nucleus | 33.0 | 39.95 |
| CDX82515 | Canola | nucleus | 35.2 | 39.91 |
| CDX89862 | Canola | nucleus | 38.2 | 39.79 |
| CDY18188 | Canola | nucleus | 38.0 | 39.67 |
| CDX86010 | Canola | nucleus | 35.4 | 39.51 |
| CDY53836 | Canola | nucleus | 35.6 | 39.29 |
| Solyc10g084180.1.1 | Tomato | nucleus | 38.6 | 39.15 |
| PGSC0003DMT400027159 | Potato | nucleus | 38.4 | 39.02 |
| CDX94759 | Canola | nucleus | 36.2 | 39.01 |
| CDY22307 | Canola | nucleus | 36.2 | 39.01 |
| CDY67009 | Canola | nucleus | 36.4 | 38.24 |
| CDY32514 | Canola | nucleus | 37.4 | 38.16 |
| CDX97521 | Canola | nucleus | 36.8 | 37.94 |
| CDY51742 | Canola | nucleus | 36.6 | 37.81 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 39.8 | 37.69 |
| CDY55238 | Canola | nucleus | 36.6 | 37.65 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 39.4 | 37.31 |
| CDY17440 | Canola | nucleus | 35.6 | 37.24 |
| CDY17615 | Canola | nucleus | 38.8 | 36.81 |
| CDX81653 | Canola | nucleus | 34.2 | 36.62 |
| CDY03081 | Canola | nucleus | 38.2 | 36.45 |
| CDY15814 | Canola | nucleus | 34.2 | 36.15 |
| CDY17614 | Canola | nucleus, plastid | 37.0 | 36.06 |
| CDX81372 | Canola | nucleus | 35.0 | 35.79 |
| CDY57128 | Canola | nucleus | 35.0 | 35.57 |
| CDY45271 | Canola | nucleus | 29.4 | 35.34 |
| CDY03080 | Canola | nucleus, plastid | 36.4 | 35.27 |
| CDY09391 | Canola | nucleus | 39.6 | 34.92 |
| CDY15811 | Canola | nucleus | 39.2 | 34.51 |
| CDY45270 | Canola | nucleus | 30.0 | 33.33 |
| CDY70938 | Canola | cytosol, nucleus | 16.4 | 30.04 |
| CDY36123 | Canola | nucleus | 22.0 | 29.1 |
| CDY51986 | Canola | nucleus | 22.0 | 29.1 |
| CDX84974 | Canola | nucleus | 21.6 | 28.2 |
| CDY60366 | Canola | nucleus | 21.4 | 27.94 |
| CDY04204 | Canola | nucleus | 19.8 | 27.58 |
| CDY04203 | Canola | plastid | 20.8 | 27.01 |
| CDY09400 | Canola | nucleus | 23.4 | 26.71 |
| CDY15800 | Canola | nucleus | 23.0 | 26.02 |
| CDY07400 | Canola | nucleus | 21.4 | 25.91 |
| CDY60095 | Canola | nucleus | 22.8 | 25.79 |
| CDY17620 | Canola | nucleus | 22.8 | 25.68 |
| CDY12268 | Canola | nucleus | 22.8 | 25.56 |
| CDY04102 | Canola | nucleus | 22.8 | 25.39 |
| CDY67587 | Canola | cytosol, nucleus | 11.4 | 25.33 |
| CDY63960 | Canola | nucleus | 22.8 | 25.28 |
| CDY68983 | Canola | nucleus | 18.6 | 23.79 |
Protein Annotations
| EnsemblPlants:CDY44344 | EnsemblPlantsGene:GSBRNA2T00079999001 | Gene3D:3.30.160.60 | GO:A0A078I461 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:JKD-like | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF42 | PFscan:PS50157 | ProteinID:CDY44344 | ProteinID:CDY44344.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EAD9F2 | UniProt:A0A078I461 | MapMan:15.5.15 | : |
Description
BnaC02g03330DBnaC02g03330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I461]
Coordinates
chrLK032587:+:31417..34029
Molecular Weight (calculated)
54968.6 Da
IEP (calculated)
10.038
GRAVY (calculated)
-0.743
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MHMIPGDPFS VSSSMGGFVH QEQHLHHLQQ HMPDINPNSN PNPDAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKFK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SHPLISTTTN LNFGNDSHVM NNPNLPHGFV HRGVHHPDIN AAISQFGLGF GHDLNAMHAQ GLSEMVQMAP AGSHHLFPDF
301: SGQHHNQQFQ ITMTSTNPNL TLSSSQQTSA SLPSLQQQHQ NLKDTSFSPI FSSSSECKQN KSLSPMSATA LLQKAAQMGS TRSNSTNAPS IFAGATMTSS
401: SSAASHPPPR SSSPMMIQQQ LNNNFNTNVS RENQNLAPPN SGVTTSSVAK NNQFQTNGSG LNPAQQMGLT RDFLGVSNEH HPHRTGHRPS QELARFSPLG
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKFK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SHPLISTTTN LNFGNDSHVM NNPNLPHGFV HRGVHHPDIN AAISQFGLGF GHDLNAMHAQ GLSEMVQMAP AGSHHLFPDF
301: SGQHHNQQFQ ITMTSTNPNL TLSSSQQTSA SLPSLQQQHQ NLKDTSFSPI FSSSSECKQN KSLSPMSATA LLQKAAQMGS TRSNSTNAPS IFAGATMTSS
401: SSAASHPPPR SSSPMMIQQQ LNNNFNTNVS RENQNLAPPN SGVTTSSVAK NNQFQTNGSG LNPAQQMGLT RDFLGVSNEH HPHRTGHRPS QELARFSPLG
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
Arabidopsis Description
JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.